Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C04_e411_06.seq
         (1551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           78   2e-14
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   1e-05
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.002
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              40   0.004
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)                       40   0.004
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          40   0.004
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     39   0.012
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)                    38   0.029
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.038
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           36   0.087
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.087
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.087
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.20 
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   35   0.20 
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  35   0.20 
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                35   0.20 
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.20 
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.20 
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)                30   5.7  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 77.8 bits (183), Expect = 2e-14
 Identities = 37/59 (62%), Positives = 40/59 (67%)
 Frame = +3

Query: 318 KLHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 494
           K+HGSLARAGKVK QTP                  +QYNRRFVNVVQTFGRRRGPNSN+
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFVNVVQTFGRRRGPNSNA 60


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 48.8 bits (111), Expect = 1e-05
 Identities = 29/67 (43%), Positives = 35/67 (52%)
 Frame = -3

Query: 787 PFRLXNLLGKGGSXRXLFRXLPPXGGKGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCNT 608
           P +   LLG+      LF   P   G+ G+VLQ  L  G  +GF  S  +     VNCNT
Sbjct: 40  PSQAAQLLGRAIGA-GLFAITP--AGEKGDVLQGDLKLGKRQGFP-SHDVVKRRPVNCNT 95

Query: 607 THYRANW 587
           THYRANW
Sbjct: 96  THYRANW 102


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 25/60 (41%), Positives = 32/60 (53%)
 Frame = -3

Query: 766 LGKGGSXRXLFRXLPPXGGKGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCNTTHYRANW 587
           +GKG     LF  + P G +G  +    +  GN +GF  S  +     VNCNTTHYRANW
Sbjct: 5   VGKGDRC-GLF-AITPAGERG--MCCKAIKLGNAKGFP-SHDVVKRRPVNCNTTHYRANW 59


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 787 PFRLXNLL-GKGGSXRXLFRXLPPXGGKGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCN 611
           PFRL N   G+      L R L     KGG   +  LSWG       S  +     VNCN
Sbjct: 591 PFRLRNCWEGRSVRASSLLRQL----AKGGCAARR-LSWG-----FPSHDVVKRRPVNCN 640

Query: 610 TTHYRANW 587
           TTHYRANW
Sbjct: 641 TTHYRANW 648


>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
          Length = 281

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 787 PFRLXNLL-GKGGSXRXLFRXLPPXGGKGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCN 611
           PFRL N   G+      L R L     KGG   +  LSWG       S  +     VNCN
Sbjct: 34  PFRLRNCWEGRSVRASSLLRQL----AKGGCAARR-LSWG-----FPSHDVVKRRPVNCN 83

Query: 610 TTHYRANW 587
           TTHYRANW
Sbjct: 84  TTHYRANW 91


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 787 PFRLXNLL-GKGGSXRXLFRXLPPXGGKGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCN 611
           PFRL N   G+      L R L     KGG   +  LSWG       S  +     VNCN
Sbjct: 34  PFRLRNCWEGRSVRASSLLRQL----AKGGCAARR-LSWG-----FPSHDVVKRRPVNCN 83

Query: 610 TTHYRANW 587
           TTHYRANW
Sbjct: 84  TTHYRANW 91


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 26/65 (40%), Positives = 33/65 (50%)
 Frame = -3

Query: 784 FRLXNLLGKGGSXRXLFRXLPPXGGKGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCNTT 605
           +R+  LLG+      LF  + P G +G  +    +  GN RGF  S        VNCNTT
Sbjct: 38  YRVAQLLGRSIGA-GLF-AITPAGERG--MCCKAIKLGNARGFP-SHDGEKRRPVNCNTT 92

Query: 604 HYRAN 590
           HYRAN
Sbjct: 93  HYRAN 97


>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
          Length = 142

 Score = 37.5 bits (83), Expect = 0.029
 Identities = 29/74 (39%), Positives = 32/74 (43%)
 Frame = +2

Query: 566 TRGGARYPIRPIVSRITIHCAVVXQRPXLGKTPXVXPT*SXLQHIPPLSAXWR*XXKKXP 745
           T GGA  PIRPIVSRITIH       P  GKT           H PP  A WR   +   
Sbjct: 34  TDGGA--PIRPIVSRITIHWPAFYNAPT-GKTLAYTQLNRLAAH-PPF-ASWRNSQEARA 88

Query: 746 XRSALSQQVXXPEW 787
            R +   +    EW
Sbjct: 89  DRPSQQLRSLNGEW 102


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 37.1 bits (82), Expect = 0.038
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -3

Query: 721 PXGGKGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCNTTHYRANW 587
           P  G   +  +    W    GF  S  +     VNCNTTHYRANW
Sbjct: 37  PLQGASHSPFRLRNCWEGRSGFP-SHDVVKRRPVNCNTTHYRANW 80


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 35.9 bits (79), Expect = 0.087
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -3

Query: 727 LPPXGGKGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCNTTHYRANW 587
           + P G +G  +    +  GN   F  S  +     VNCNTTHYRANW
Sbjct: 10  ITPAGERG--MCCKAIKLGNASVFP-SHDVVKRRPVNCNTTHYRANW 53


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 35.9 bits (79), Expect = 0.087
 Identities = 21/41 (51%), Positives = 23/41 (56%)
 Frame = -3

Query: 709 KGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCNTTHYRANW 587
           KGG   +  LSW    GF  S  +     VNCNTTHYRANW
Sbjct: 43  KGGCAARR-LSWVTP-GFP-SHDVVKRRPVNCNTTHYRANW 80


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 35.9 bits (79), Expect = 0.087
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -3

Query: 727 LPPXGGKGGNVLQXXLSWGNXRGFSQSRTLXNDGAVNCNTTHYRANW 587
           + P G +G  +    +  GN   F  S  +     VNCNTTHYRANW
Sbjct: 24  ITPAGERG--MCCKAIKLGNASVFP-SHDVVKRRPVNCNTTHYRANW 67


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 622 VNCNTTHYRANW 587
           VNCNTTHYRANW
Sbjct: 13  VNCNTTHYRANW 24


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 622 VNCNTTHYRANW 587
           VNCNTTHYRANW
Sbjct: 10  VNCNTTHYRANW 21


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 622 VNCNTTHYRANW 587
           VNCNTTHYRANW
Sbjct: 50  VNCNTTHYRANW 61


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 622  VNCNTTHYRANW 587
            VNCNTTHYRANW
Sbjct: 1888 VNCNTTHYRANW 1899


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 622 VNCNTTHYRANW 587
           VNCNTTHYRANW
Sbjct: 48  VNCNTTHYRANW 59


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 622 VNCNTTHYRANW 587
           VNCNTTHYRANW
Sbjct: 10  VNCNTTHYRANW 21


>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 673 GNXRGFSQSRTLXNDGAVNCNTTHYRAN 590
           GN   F +S  +     VNCNTTHYRAN
Sbjct: 14  GNASVF-RSHDVVKRRPVNCNTTHYRAN 40


>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
          Length = 792

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 96  RYKMQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 272
           R  M L  RG ST  +++  + S+ D+K    L   +  E + L +    LEDS  + E
Sbjct: 182 RKTMLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICE 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,918,706
Number of Sequences: 59808
Number of extensions: 519161
Number of successful extensions: 916
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5058981887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)