Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C04_e411_06.seq
         (1551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    79   8e-15
U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical pr...    30   5.1  
U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    29   8.9  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    29   8.9  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    29   8.9  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    29   8.9  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 79.0 bits (186), Expect = 8e-15
 Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
 Frame = +3

Query: 105 MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 275
           MQ+ + G   +TH LDV+   ++  IK  +        EE ++S     L +   + E  
Sbjct: 1   MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55

Query: 276 --SSTELDLTVPLLGGKLHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVN 449
             S + L +   LLGGK+HGSLARAGKV+ QTP                  +QY RR+VN
Sbjct: 56  IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115

Query: 450 VVQTFGRRRGPNSNS 494
           V    G++RGPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130


>U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical
           protein C16C8.4 protein.
          Length = 226

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 132 THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 272
           ++   ++ ++++ DIKN +    D+      LS  G  LED C + +
Sbjct: 164 SYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGD 210


>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 168 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKLHGSLARA 344
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 528 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 587

Query: 345 GKV 353
             V
Sbjct: 588 ASV 590


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 168 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKLHGSLARA 344
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 345 GKV 353
             V
Sbjct: 786 ASV 788


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 168 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKLHGSLARA 344
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 794 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 853

Query: 345 GKV 353
             V
Sbjct: 854 ASV 856


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 168 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKLHGSLARA 344
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 345 GKV 353
             V
Sbjct: 786 ASV 788


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,575,107
Number of Sequences: 27780
Number of extensions: 386504
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4473305038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)