Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C03_e403_05.seq
         (1654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    40   8e-04
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    31   0.46 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    31   0.61 
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    28   3.3  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   5.7  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    27   7.5  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +2

Query: 461 RSRDRHSHK-KDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQRIRAKD 637
           RS   H +  +D   +  +H+  RS+SR                 TVF  QL+ R+ +++
Sbjct: 197 RSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLSEEERDRR-TVFVSQLANRLTSRE 255

Query: 638 LEEFFSSVGKVRDVRMITCXXTRRFKGI 721
           L +FF   G VRD +++    + R KG+
Sbjct: 256 LYDFFEQAGPVRDAQIVRDKISGRSKGV 283


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
 Frame = +2

Query: 167 NERTSTPISTKKRIKKAVEDAAGQEIEEDQEIK-ILNVQET-EMIRKIKNVKRKGT---V 331
           N+  + P+ +  R+   V +   +E  + + ++ +   Q+  E+IRK+   K       +
Sbjct: 2   NQTEAAPVVSVSRVYAHVNEEMPREYWDYENMQEVFGYQDNYEIIRKVGRGKYSEVFEGL 61

Query: 332 NVVIGIKIADTEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKE 511
           NV+   K     +K VK KKI  EIK   ++ A   N++ + D  RD  S       E  
Sbjct: 62  NVLNNSKCIIKVLKPVKYKKIKREIKI-LQNLAGGPNIISLLDIVRDPESKTPSLIFEFV 120

Query: 512 AHKDYRS 532
            + D+R+
Sbjct: 121 DNIDFRT 127


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
 Frame = +2

Query: 161 QSNERTSTPI-STKKRIKKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNV 337
           +  E +  P+   KK  KKA    A   + +D +   L+ +E+E   K K  K+K     
Sbjct: 101 EEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSKD 160

Query: 338 VIGIKIADTEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAH 517
                + D +I++ ++ K   + K+K  D A  K+    + R ++  + K    LE E +
Sbjct: 161 DGSEALDDGDIESSEKDK-KKKKKSKENDDAPKKD---RKTRKKEEKARKLASMLESE-N 215

Query: 518 KD 523
           KD
Sbjct: 216 KD 217


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 319 PFHVLYFSYHLCLLDVENLYLLIFFYLLTGCVFYCFLYP 203
           PFH+++  Y LC+ +     L +   LL  C  +   YP
Sbjct: 556 PFHMVFECYKLCINEFTPFDLEVLALLLESCGRFLLRYP 594


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKG 718
           T+F   L+ + +  DL  FFS VG ++   ++T   T   +G
Sbjct: 6   TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRG 47


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
 Frame = +2

Query: 209 KKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKN---------VKRKGTVNVV--IGIKI 355
           KK  ++   Q   E+ E   LN +    ++ IKN         ++    +  +  + + I
Sbjct: 155 KKLKQERLAQNYSENGETNALNTKNESTVQNIKNSLHPNEHSFIRDAAALGAIREVDLGI 214

Query: 356 ADTEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHK--KDKSLEKEAHKDYR 529
             T++ N+K  +   + + + K+    K +    D +RD    K  K  S ++E+   YR
Sbjct: 215 ISTDVDNLKNGRKRQKKRARMKEKLDSKALRTSEDAARDEFIEKMLKPISQDEESKGIYR 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,738,262
Number of Sequences: 5004
Number of extensions: 55318
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 939550476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)