Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_C03_e403_05.seq
(1654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 64 4e-10
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2) 40 0.008
SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08) 37 0.040
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.50
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 33 0.66
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) 32 1.2
SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056) 32 1.2
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.5
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24) 31 2.0
SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.7
SB_1686| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-12) 31 2.7
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 31 3.5
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.6
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 30 4.6
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.6
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 30 4.6
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.6
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 30 6.1
SB_24505| Best HMM Match : Hep_59 (HMM E-Value=1.1e-31) 30 6.1
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.1
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9) 29 8.1
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 63.7 bits (148), Expect = 4e-10
Identities = 39/120 (32%), Positives = 60/120 (50%)
Frame = +2
Query: 362 TEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSR 541
T ++ +R + N+ ++ K ++ R R+ K+ S E + + + S R
Sbjct: 70 TPPRHRRRSRSPNKKHSRSKSRTPPRHRRRSRSPRRESIDRKRRSSYESPSPQPFPSPVR 129
Query: 542 GXXXXXXXXXXXXXXXXTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
TVFCMQL++ IR +DLEEFFS VG+V DVR+I+ +RR KGI
Sbjct: 130 KPPEPMTEESAEEKDQRTVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGI 189
>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
Length = 374
Score = 39.5 bits (88), Expect = 0.008
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Frame = +2
Query: 122 QPEQXXXRITLPLQSNERTSTPISTKKRIKKAVEDAAGQEIEEDQEIKILNVQETEMIRK 301
QP + RI ++ E ++ +++ E+ + +EE++ +K +E E K
Sbjct: 168 QPSRRSNRIHESVRKREIEEAVRIAQEEMRREREEEENRILEEEERVKR---EEEEKKAK 224
Query: 302 IKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVNEIKTKXKDGARIKNV----VLIRDRSR 469
KR G I +K + EIK K ++ E T+ + A+ +N+ + +DR +
Sbjct: 225 EVEEKRMGEDEEQIKLKEEEVEIKEDKTAELELEETTEKSNHAKRENLSPSKIHKKDREK 284
Query: 470 DRHSHKKDKSLEKEAHKDYRSK 535
K+K+++K KD + +
Sbjct: 285 TPTKKNKEKNVKKNEEKDVQKE 306
>SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08)
Length = 277
Score = 37.1 bits (82), Expect = 0.040
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Frame = +2
Query: 218 VEDAAGQEIEEDQEIKILNVQET--EMIRKIKNVKRKG-TVNVVIGIKIADTEIKNVKRK 388
V+DAA E E D E KI +QE +M+ + + +RK + +++ + D E+ +KRK
Sbjct: 173 VKDAAASEREIDNEDKIEFIQENLKQMVYRYEEAERKAPPLEMLLDQLVEDLELYRLKRK 232
Query: 389 KIVNEIK 409
++ E+K
Sbjct: 233 QVDEEMK 239
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 33.5 bits (73), Expect = 0.50
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = +2
Query: 209 KKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEIKNVKRK 388
+K+VED G++ ++ ++ +E M K + + KGT V K + KN K K
Sbjct: 353 EKSVEDKKGKKKNYNKSVE----REDSMAMK-EELHSKGTNTVKNKTKNKKDKTKNNKDK 407
Query: 389 KIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLE-KEAHKDYRSKSR 541
N+ KTK ++ + KN ++D+ KDK+ E K+ K+ + K++
Sbjct: 408 TKENKDKTK-ENKDKTKNNKDKTKENKDKTKENKDKTKENKDKTKENKDKTK 458
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 33.1 bits (72), Expect = 0.66
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -1
Query: 262 YLLIFFYLLTGCVFYCFLYPFLCAYRCTCPFVALKWKC 149
Y + Y C +YC+ Y + C Y C C + + C
Sbjct: 477 YYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYC 514
>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
Length = 1183
Score = 32.3 bits (70), Expect = 1.2
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +2
Query: 206 IKKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEIKNVK- 382
+ ++V Q+ D E++ L ++ + ++KN ++KG+ + +K + E++ +K
Sbjct: 172 VDESVRRLEQQKQTLDYEVRELKQKKQNLELELKNAEKKGSRQLENMLKDHEEEVRRMKE 231
Query: 383 -RKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHK 520
RK + EIK ++ K V +S +R ++ K L A++
Sbjct: 232 ERKDLCEEIKALREEVNEFKARV-SHLKSEERSLDRRTKELTNNANE 277
>SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056)
Length = 416
Score = 32.3 bits (70), Expect = 1.2
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 350 KIADTEIKNVKRKKIVNEIKTKXK-DGARIKNVVLIRDRSRDRHSHKKDK-SLEKEAHKD 523
K+ + E++ KR++ + + + K D R+K+ RD++RDR ++DK ++ KD
Sbjct: 292 KLKEDELQRSKREREREKERDRNKEDRDRVKDRDRDRDKARDRDRERRDKHKSSRDRDKD 351
Query: 524 YRSKSR 541
S+ R
Sbjct: 352 RSSRDR 357
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 31.9 bits (69), Expect = 1.5
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Frame = -1
Query: 439 LYPCSVFXLCLYLVHDLFPFHVLYLCVRDLYPDHDVHGPFPFHVLYFSYHLCLLDVENLY 260
LY C++ C++ + H LYLCV P + F F + +LCL + LY
Sbjct: 1744 LYLCAI---CIFALS--VSLHYLYLCVFVFLPYLCLCAIFVFALSLSLRYLCLRAMHYLY 1798
Query: 259 L-----------LIFFYLLTGCVFYCFL---YPFLCAYRCTCPFVALKWKCYPXXVLFRL 122
L L + Y T C+F + Y LCA FV+L + C +F L
Sbjct: 1799 LCGIRIFALSVSLHYLYPCTICIFALSVSLHYLSLCAVCILALFVSLSYLCLCAICIFAL 1858
>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
Length = 333
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = -1
Query: 334 VHGPFPFHVLYFSYHLCLLDVENLYLLIFFYLLTGCVF--YC-FLYPFLC----AYRCTC 176
+H F + L+ HLC L + L+F ++ CV+ C +Y +LC AY C C
Sbjct: 206 LHLSFRVYTLHLRLHLCALAFALVCPLLFTFMFALCVYAHACTCIYAYLCTRIYAYVCAC 265
Query: 175 PF 170
+
Sbjct: 266 VY 267
>SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 31.1 bits (67), Expect = 2.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 407 KTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKD---YRSKSR 541
+ K +D R +N ++R RDR +D++ E+E ++D YR K R
Sbjct: 343 RDKNRDKNRDRNREREKNRERDRRDRDRDRAKERERNRDKDRYRGKPR 390
>SB_1686| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-12)
Length = 362
Score = 31.1 bits (67), Expect = 2.7
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 319 PFHVLYFSYHLCLLDVENLYLLIFFYLLTGCVFY--CFLYPFLCAYRCTCPFVALK 158
P+ V+ LC N+ LI+ + LT +F C L PFLCA+R ALK
Sbjct: 247 PWFVMMQMLPLCKTCQRNMDKLIWAFKLTFVLFQANCALNPFLCAWRLPKYNAALK 302
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 30.7 bits (66), Expect = 3.5
Identities = 21/101 (20%), Positives = 46/101 (45%)
Frame = +2
Query: 221 EDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVN 400
E+A + +E+D++ ++ QE +++ K + K+ ++ +K EI + + + +
Sbjct: 459 EEAEARRLEKDRKARLK--QEGKLLSKAEKEKKAKQQAMLEAMKQQGIEIPALMKAEEQD 516
Query: 401 EIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKD 523
+K + GAR K + + D+ EKE D
Sbjct: 517 TVKKPVRYGARKKKPQQHQQQESDKQEETAPDESEKETETD 557
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 30.3 bits (65), Expect = 4.6
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +2
Query: 194 TKKRIKKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEIK 373
++KR+KK +E + D + ++ RK K K K ++D+E
Sbjct: 169 SEKRLKKE----KNKEKQRDSSESSSDSEDDRKRRKKKVKKDKKQKAKDSSESLSDSEDD 224
Query: 374 NVKRKKIVN-EIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKS 538
+RKK V EIK K KD + + + R+R KK EK+ HK + S
Sbjct: 225 RERRKKKVKKEIKHKAKDSSESS---IDSEDDRERKERKKKNKKEKK-HKSKETSS 276
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 30.3 bits (65), Expect = 4.6
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +2
Query: 158 LQSNERTST--PISTKKRIKKAVEDAAGQEIE-EDQEIKILNVQETEMIRKIKNVKRKGT 328
+Q ++R++T P + K +E A +E E + +E K + E + +N +++
Sbjct: 563 VQCDKRSATLDPGNIKMAFNHLIEKAEAREKERQKKEEKEESSHSDEDTSRDRNREKE-- 620
Query: 329 VNVVIGIKIADTEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEK 508
N K + E + +R K + K K K+ + K ++R RD+ SHKK +
Sbjct: 621 -NDREREKEREKEKEKEERDKEREKEKEKEKEREKEKEREREKERDRDKSSHKKRR---- 675
Query: 509 EAHKDYRSKSR 541
HK RS+SR
Sbjct: 676 --HKRSRSRSR 684
>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 30.3 bits (65), Expect = 4.6
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Frame = -1
Query: 430 CSVFXLCLYLVHDLFPFHVLY--LCVRDLYPDHDVHGPF----PFHVLYFSYHLCLLDVE 269
C + C Y + + Y C D+ +D+ P+ P+H+ C D++
Sbjct: 513 CPYYITCPYDITYPYDITCPYDITCPYDITYPYDITYPYDITCPYHITCPYDITCPYDIK 572
Query: 268 NLYLLIFFYLLTGCVFYCFLYPFLCAYRCTCPF 170
Y + Y +T + Y C Y TCP+
Sbjct: 573 CPYDITCLYHITCPYGITYPYDITCPYNITCPY 605
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 30.3 bits (65), Expect = 4.6
Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = +2
Query: 200 KRIKKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEIKN- 376
+R ++ E+A +++EE + ++ + ++ E +++ + +RK K + E +N
Sbjct: 345 ERKRREREEAKRKQLEEAERLERVRLEAEEEMKRREEERRKKREEAERERKRKEEEERNR 404
Query: 377 VKRKKIVNEIKTKXKDGARIKNVVLIRDRSRD----RHSHKKDKSLEKEAHKDYRSKSR 541
K++K E + + ++ K LI R + R K D+ LE+ A ++ + R
Sbjct: 405 EKQEKARLEREKRMREDFERKKQELIAQRKLEEEIRREQEKIDRELEEAARREEEERIR 463
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 30.3 bits (65), Expect = 4.6
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 359 DTEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSK 535
+T+ N I N++ ++ KD + K + + + HKK+K EK+ HK + K
Sbjct: 136 ETKDSNEGSLTISNDLNSEKKDKKKHKK----HSKDKKKKKHKKEKKREKDKHKHKQEK 190
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 29.9 bits (64), Expect = 6.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 322 FPFHVLY--FSYHLCLLDVENLYLLIFFYLLTGCVFYCFLYPFLCAYRCTCPFVALKWKC 149
FP V FSYH +DV + + C+ + ++P C+YRC P AL C
Sbjct: 1109 FPHRVFMSVFSYHRVHVDV--FPITCSCRCVPQCMLHVDVFPIKCSYRCV-PHHALMSMC 1165
Query: 148 YP 143
P
Sbjct: 1166 SP 1167
>SB_24505| Best HMM Match : Hep_59 (HMM E-Value=1.1e-31)
Length = 230
Score = 29.9 bits (64), Expect = 6.1
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +2
Query: 245 EEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVNEIKTKXKD 424
+ED E ++ ++ E R+I+ +++ +G+ + K V + V K K
Sbjct: 14 DEDDEAEVA-IEALEERREIQKFRKRPKGVSAVGLALG----KKVDIEDEVESDPFKLKT 68
Query: 425 GARIKNVVLIRDRSRDRHSHKKDKSL 502
G ++ LI+DR RDR KS+
Sbjct: 69 GGLVQINDLIQDRERDREGEDSGKSI 94
>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 29.5 bits (63), Expect = 8.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 445 YVLYPC-SVFXLCLYLVHDLFPFHVLYLCVRDLY 347
+VLY C V CL++++ HVLY C+R LY
Sbjct: 146 HVLYACLHVLHACLHVLYACL--HVLYACLRVLY 177
>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
Length = 492
Score = 29.5 bits (63), Expect = 8.1
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = -1
Query: 325 PFPFHVLYFSYHLCLLDVENLYLLIFFYLLTGCVFYCFLYPFLCAYRCTCP-FVALKWKC 149
P F ++ + LCL V + +FF + T C CF P + YR P F A+ +C
Sbjct: 181 PVFFAMITQCFSLCLPGVFRYFYPVFFAMFTRCFSLCF--PGV--YRYDYPVFFAIFTRC 236
Query: 148 YPXXV--LFRLVKYAGLLPQS 92
+ + +FR + Y LP S
Sbjct: 237 FSLYLPGVFRYI-YPSHLPHS 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,658,017
Number of Sequences: 59808
Number of extensions: 423877
Number of successful extensions: 1331
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5418577616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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