Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_C03_e403_05.seq
(1654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein. 70 2e-11
AL357374-11|CAI13608.1| 202|Homo sapiens RNA binding motif prot... 70 2e-11
L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein. 69 4e-11
L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein. 69 4e-11
BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif prote... 69 4e-11
AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif prote... 69 4e-11
AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif prote... 69 4e-11
AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens ... 69 4e-11
AL357374-10|CAI13606.1| 231|Homo sapiens RNA binding motif prot... 69 5e-11
AL357374-7|CAI13605.1| 336|Homo sapiens RNA binding motif prote... 68 1e-10
CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein. 65 8e-10
BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif prote... 65 8e-10
BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif prote... 65 8e-10
AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein. 65 8e-10
AF087905-1|AAP97203.1| 425|Homo sapiens splicing factor SF2 pro... 65 8e-10
AL357374-12|CAI13607.1| 193|Homo sapiens RNA binding motif prot... 64 1e-09
BX537770-1|CAD97833.1| 373|Homo sapiens hypothetical protein pr... 58 9e-08
AK124805-1|BAC85954.1| 189|Homo sapiens protein ( Homo sapiens ... 35 0.99
BC034969-1|AAH34969.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 34 1.3
AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protei... 34 1.3
AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 34 1.3
AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 34 1.3
AK127397-1|BAC86958.1| 130|Homo sapiens protein ( Homo sapiens ... 34 1.3
AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein. 34 1.3
AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein. 34 1.3
AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens ... 34 1.7
BC032592-1|AAH32592.1| 529|Homo sapiens nucleolar protein NOP5/... 33 4.0
AF263608-1|AAF91394.1| 529|Homo sapiens nucleolar protein 5 pro... 33 4.0
AF123534-1|AAD27610.1| 529|Homo sapiens nucleolar protein NOP5/... 33 4.0
AC064836-1|AAY24145.1| 529|Homo sapiens unknown protein. 33 4.0
AK094058-1|BAC04274.1| 225|Homo sapiens protein ( Homo sapiens ... 32 5.3
BC062352-1|AAH62352.1| 771|Homo sapiens TAF3 protein protein. 32 7.0
AL390294-1|CAH73142.1| 929|Homo sapiens TAF3 RNA polymerase II,... 32 7.0
AL353754-1|CAH73451.1| 929|Homo sapiens TAF3 RNA polymerase II,... 32 7.0
AL159172-1|CAI15661.1| 929|Homo sapiens TAF3 RNA polymerase II,... 32 7.0
AL117661-1|CAB56032.1| 681|Homo sapiens hypothetical protein pr... 32 7.0
AJ292190-1|CAC34475.1| 727|Homo sapiens TAFII140 protein protein. 32 7.0
BC009306-1|AAH09306.1| 522|Homo sapiens NOP5/NOP58 protein prot... 31 9.2
>BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein.
Length = 508
Score = 70.1 bits (164), Expect = 2e-11
Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Frame = +2
Query: 407 KTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKD---YRSKSRGXXXXXXXXXXX 577
K++ + +R K R RSRDR + +S + + +R
Sbjct: 67 KSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYRRRSRSKSPFRKDKSPVREPIDNLTPE 126
Query: 578 XXXXXTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
TVFCMQL+ RIR +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 127 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 174
>AL357374-11|CAI13608.1| 202|Homo sapiens RNA binding motif protein
39 protein.
Length = 202
Score = 70.1 bits (164), Expect = 2e-11
Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Frame = +2
Query: 407 KTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKD---YRSKSRGXXXXXXXXXXX 577
K++ + +R K R RSRDR + +S + + +R
Sbjct: 67 KSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYRRRSRSKSPFRKDKSPVREPIDNLTPE 126
Query: 578 XXXXXTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
TVFCMQL+ RIR +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 127 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 174
>L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein.
Length = 530
Score = 69.3 bits (162), Expect = 4e-11
Identities = 43/94 (45%), Positives = 55/94 (58%)
Frame = +2
Query: 440 NVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQ 619
++ L R RSR + +KDKS +E + + R TVFCMQL+
Sbjct: 117 SIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDAR--------------TVFCMQLAA 162
Query: 620 RIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
RIR +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 163 RIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 196
>L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein.
Length = 524
Score = 69.3 bits (162), Expect = 4e-11
Identities = 43/94 (45%), Positives = 55/94 (58%)
Frame = +2
Query: 440 NVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQ 619
++ L R RSR + +KDKS +E + + R TVFCMQL+
Sbjct: 117 SIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDAR--------------TVFCMQLAA 162
Query: 620 RIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
RIR +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 163 RIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 196
>BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 69.3 bits (162), Expect = 4e-11
Identities = 43/94 (45%), Positives = 55/94 (58%)
Frame = +2
Query: 440 NVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQ 619
++ L R RSR + +KDKS +E + + R TVFCMQL+
Sbjct: 117 SIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDAR--------------TVFCMQLAA 162
Query: 620 RIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
RIR +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 163 RIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 196
>AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif protein
39 protein.
Length = 524
Score = 69.3 bits (162), Expect = 4e-11
Identities = 43/94 (45%), Positives = 55/94 (58%)
Frame = +2
Query: 440 NVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQ 619
++ L R RSR + +KDKS +E + + R TVFCMQL+
Sbjct: 117 SIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDAR--------------TVFCMQLAA 162
Query: 620 RIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
RIR +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 163 RIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 196
>AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 69.3 bits (162), Expect = 4e-11
Identities = 43/94 (45%), Positives = 55/94 (58%)
Frame = +2
Query: 440 NVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQ 619
++ L R RSR + +KDKS +E + + R TVFCMQL+
Sbjct: 117 SIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDAR--------------TVFCMQLAA 162
Query: 620 RIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
RIR +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 163 RIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 196
>AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens
cDNA FLJ10482 fis, clone NT2RP2000153, weakly similar to
GAR2 PROTEIN. ).
Length = 406
Score = 69.3 bits (162), Expect = 4e-11
Identities = 40/91 (43%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +2
Query: 455 RDRSRDRH--SHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQRIR 628
R RS DR S + + +E YRS TVFCMQL+ RIR
Sbjct: 85 RSRSWDRRHGSESRSRDHRREDRVHYRSPPLTTGEPVDNLSPEERDARTVFCMQLAARIR 144
Query: 629 AKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
+DLE+FFS+VGKVRDVR+I+ +RR KGI
Sbjct: 145 PRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 175
>AL357374-10|CAI13606.1| 231|Homo sapiens RNA binding motif protein
39 protein.
Length = 231
Score = 68.9 bits (161), Expect = 5e-11
Identities = 42/92 (45%), Positives = 54/92 (58%)
Frame = +2
Query: 446 VLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQRI 625
+ +R RSR + +KDKS +E + + R TVFCMQL+ RI
Sbjct: 118 IKLRRRSRSKSPFRKDKSPVREPIDNLTPEERDAR--------------TVFCMQLAARI 163
Query: 626 RAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
R +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 164 RPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 195
>AL357374-7|CAI13605.1| 336|Homo sapiens RNA binding motif protein
39 protein.
Length = 336
Score = 67.7 bits (158), Expect = 1e-10
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
TVFCMQL+ RIR +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 26 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 68
>CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein.
Length = 423
Score = 64.9 bits (151), Expect = 8e-10
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
TVFCMQL+ RIR +DLE+FFS+VGKVRDVR+I+ +RR KGI
Sbjct: 151 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 193
>BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif protein
23 protein.
Length = 423
Score = 64.9 bits (151), Expect = 8e-10
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
TVFCMQL+ RIR +DLE+FFS+VGKVRDVR+I+ +RR KGI
Sbjct: 151 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 193
>BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif protein
23 protein.
Length = 424
Score = 64.9 bits (151), Expect = 8e-10
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
TVFCMQL+ RIR +DLE+FFS+VGKVRDVR+I+ +RR KGI
Sbjct: 151 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 193
>AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein.
Length = 418
Score = 64.9 bits (151), Expect = 8e-10
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
TVFCMQL+ RIR +DLE+FFS+VGKVRDVR+I+ +RR KGI
Sbjct: 145 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 187
>AF087905-1|AAP97203.1| 425|Homo sapiens splicing factor SF2
protein.
Length = 425
Score = 64.9 bits (151), Expect = 8e-10
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
TVFCMQL+ RIR +DLE+FFS+VGKVRDVR+I+ +RR KGI
Sbjct: 151 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 193
>AL357374-12|CAI13607.1| 193|Homo sapiens RNA binding motif protein
39 protein.
Length = 193
Score = 64.1 bits (149), Expect = 1e-09
Identities = 40/90 (44%), Positives = 52/90 (57%)
Frame = +2
Query: 440 NVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQ 619
++ L R RSR + +KDKS +E + + R TVFCMQL+
Sbjct: 117 SIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDAR--------------TVFCMQLAA 162
Query: 620 RIRAKDLEEFFSSVGKVRDVRMITCXXTRR 709
RIR +DLEEFFS+VGKVRDVRMI+ +RR
Sbjct: 163 RIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
>BX537770-1|CAD97833.1| 373|Homo sapiens hypothetical protein
protein.
Length = 373
Score = 58.0 bits (134), Expect = 9e-08
Identities = 28/39 (71%), Positives = 33/39 (84%)
Frame = +2
Query: 605 MQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
MQL+ RIR +DLEEFFS+VGKVRDVRMI+ +RR KGI
Sbjct: 1 MQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 39
>AK124805-1|BAC85954.1| 189|Homo sapiens protein ( Homo sapiens
cDNA FLJ42815 fis, clone BRCAN2014143. ).
Length = 189
Score = 34.7 bits (76), Expect = 0.99
Identities = 21/87 (24%), Positives = 41/87 (47%)
Frame = -1
Query: 322 FPFHVLYFSYHLCLLDVENLYLLIFFYLLTGCVFYCFLYPFLCAYRCTCPFVALKWKCYP 143
+P+ +Y + C+ +YL ++ Y+ C+ Y +YP+LC Y P++ C
Sbjct: 10 YPYICIYMHVYPCIC----IYLHVYTYI---CM-YIHIYPYLCMYVHIYPYIC---TCIY 58
Query: 142 XXVLFRLVKYAGLLPQS*IYASCRITC 62
+ R+ YA + ++ I+ C C
Sbjct: 59 THICMRVHVYAYMYVRTYIHIMCMHVC 85
>BC034969-1|AAH34969.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 34.3 bits (75), Expect = 1.3
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +2
Query: 347 IKIAD-TEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKD-KSLEKEAHK 520
+KI D ++ K+ K+ I+NE +++ + G + ++ V +R +S+DR S K+ KS E K
Sbjct: 263 VKIEDKSKSKDRKKSPIINESRSRDR-GKKSRSPVDLRGKSKDRRSRSKERKSKRSETDK 321
Query: 521 D 523
+
Sbjct: 322 E 322
>AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protein
kinase protein.
Length = 1007
Score = 34.3 bits (75), Expect = 1.3
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +2
Query: 347 IKIAD-TEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKD-KSLEKEAHK 520
+KI D ++ K+ K+ I+NE +++ + G + ++ V +R +S+DR S K+ KS E K
Sbjct: 263 VKIEDKSKSKDRKKSPIINESRSRDR-GKKSRSPVDLRGKSKDRRSRSKERKSKRSETDK 321
Query: 521 D 523
+
Sbjct: 322 E 322
>AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 34.3 bits (75), Expect = 1.3
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +2
Query: 347 IKIAD-TEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKD-KSLEKEAHK 520
+KI D ++ K+ K+ I+NE +++ + G + ++ V +R +S+DR S K+ KS E K
Sbjct: 263 VKIEDKSKSKDRKKSPIINESRSRDR-GKKSRSPVDLRGKSKDRRSRSKERKSKRSETDK 321
Query: 521 D 523
+
Sbjct: 322 E 322
>AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 34.3 bits (75), Expect = 1.3
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +2
Query: 347 IKIAD-TEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKD-KSLEKEAHK 520
+KI D ++ K+ K+ I+NE +++ + G + ++ V +R +S+DR S K+ KS E K
Sbjct: 263 VKIEDKSKSKDRKKSPIINESRSRDR-GKKSRSPVDLRGKSKDRRSRSKERKSKRSETDK 321
Query: 521 D 523
+
Sbjct: 322 E 322
>AK127397-1|BAC86958.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ45488 fis, clone BRTHA2003759. ).
Length = 130
Score = 34.3 bits (75), Expect = 1.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 316 FHVLYFSYHLCLLDVENLYLLIFFYLLTGCVFYCFLYPFLCAY 188
F +Y ++ + +YL I+FY+ T Y F+Y ++C Y
Sbjct: 16 FIFIYIFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLY 58
>AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.
Length = 1007
Score = 34.3 bits (75), Expect = 1.3
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +2
Query: 347 IKIAD-TEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKD-KSLEKEAHK 520
+KI D ++ K+ K+ I+NE +++ + G + ++ V +R +S+DR S K+ KS E K
Sbjct: 263 VKIEDKSKSKDRKKSPIINESRSRDR-GKKSRSPVDLRGKSKDRRSRSKERKSKRSETDK 321
Query: 521 D 523
+
Sbjct: 322 E 322
>AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.
Length = 1028
Score = 34.3 bits (75), Expect = 1.3
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +2
Query: 347 IKIAD-TEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKD-KSLEKEAHK 520
+KI D ++ K+ K+ I+NE +++ + G + ++ V +R +S+DR S K+ KS E K
Sbjct: 284 VKIEDKSKSKDRKKSPIINESRSRDR-GKKSRSPVDLRGKSKDRRSRSKERKSKRSETDK 342
Query: 521 D 523
+
Sbjct: 343 E 343
>AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens
cDNA FLJ42813 fis, clone BRCAN2012355. ).
Length = 180
Score = 33.9 bits (74), Expect = 1.7
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = -1
Query: 445 YVLYPCSVFXLCLYLVHDLFPFHVLYLCV-RDLYPDHDVHG-PFPFHVLYFSYHLCLLDV 272
YV V+ VH H+ YLC+ Y +H + + +Y H+ +
Sbjct: 54 YVYTYIYVYTYTYVCVHIHICVHI-YLCMYTHTYMCAHIHMCVYTYIYVYIYTHIHICVH 112
Query: 271 ENLYLLIFFYLLTGCVFYCFLYP-FLCAYRCTCPFV 167
N+Y+ I+ Y+ T Y ++Y ++C Y C ++
Sbjct: 113 INMYVSIYVYIYTCIQIYIYMYTLYVCTYTYMCTYI 148
>BC032592-1|AAH32592.1| 529|Homo sapiens nucleolar protein
NOP5/NOP58 protein.
Length = 529
Score = 32.7 bits (71), Expect = 4.0
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Frame = +2
Query: 149 TLPLQSNERTSTPISTKKRI--KKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRK 322
TLP S +R + + I KKA + ++EE++E K+ +ET + +K K K+K
Sbjct: 435 TLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKK 494
Query: 323 -------GTVNVVIGIKIADTEIKNVKRKKIVNE 403
IA E K K+KK NE
Sbjct: 495 HIKEEPLSEEEPCTSTAIASPEKKKKKKKKRENE 528
>AF263608-1|AAF91394.1| 529|Homo sapiens nucleolar protein 5
protein.
Length = 529
Score = 32.7 bits (71), Expect = 4.0
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Frame = +2
Query: 149 TLPLQSNERTSTPISTKKRI--KKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRK 322
TLP S +R + + I KKA + ++EE++E K+ +ET + +K K K+K
Sbjct: 435 TLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKK 494
Query: 323 -------GTVNVVIGIKIADTEIKNVKRKKIVNE 403
IA E K K+KK NE
Sbjct: 495 HIKEEPLSEEEPCTSTAIASPEKKKKKKKKRENE 528
>AF123534-1|AAD27610.1| 529|Homo sapiens nucleolar protein
NOP5/NOP58 protein.
Length = 529
Score = 32.7 bits (71), Expect = 4.0
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Frame = +2
Query: 149 TLPLQSNERTSTPISTKKRI--KKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRK 322
TLP S +R + + I KKA + ++EE++E K+ +ET + +K K K+K
Sbjct: 435 TLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKK 494
Query: 323 -------GTVNVVIGIKIADTEIKNVKRKKIVNE 403
IA E K K+KK NE
Sbjct: 495 HIKEEPLSEEEPCTSTAIASPEKKKKKKKKRENE 528
>AC064836-1|AAY24145.1| 529|Homo sapiens unknown protein.
Length = 529
Score = 32.7 bits (71), Expect = 4.0
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Frame = +2
Query: 149 TLPLQSNERTSTPISTKKRI--KKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRK 322
TLP S +R + + I KKA + ++EE++E K+ +ET + +K K K+K
Sbjct: 435 TLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKK 494
Query: 323 -------GTVNVVIGIKIADTEIKNVKRKKIVNE 403
IA E K K+KK NE
Sbjct: 495 HIKEEPLSEEEPCTSTAIASPEKKKKKKKKRENE 528
>AK094058-1|BAC04274.1| 225|Homo sapiens protein ( Homo sapiens
cDNA FLJ36739 fis, clone UTERU2013262, weakly similar to
AXONEME-ASSOCIATED PROTEIN MST101(2). ).
Length = 225
Score = 32.3 bits (70), Expect = 5.3
Identities = 24/117 (20%), Positives = 53/117 (45%)
Frame = +2
Query: 191 STKKRIKKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEI 370
+T+K +K AA + EE+ + K+ ++ + K K K + IK+ +
Sbjct: 108 ATEKGGEKKEAVAAEVKNEEEDQKKMKKIKTKRKGKLEKKTKMKKGKKMEKRIKMEMRKE 167
Query: 371 KNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSR 541
K KRKK+ ++KT+ + K ++ R + +K ++ E ++ + + +
Sbjct: 168 KMQKRKKMEKKVKTEKEMEKMEKRKEKMKKRKKTEKKQGMEKRMKMEKRREIKKRGK 224
>BC062352-1|AAH62352.1| 771|Homo sapiens TAF3 protein protein.
Length = 771
Score = 31.9 bits (69), Expect = 7.0
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = +2
Query: 116 LHQPEQXXXRITLPLQSNERTSTPISTKKRIKKAVEDAAGQEIEEDQEIKILN-VQETEM 292
LH+ + ++ ++ ++ + TK + K+ D ++ + + K + V+E E
Sbjct: 562 LHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKE- 620
Query: 293 IRKIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVN-EIKTKXKDGARIKNVVLIRDRSR 469
K K R+ +K + + K K+ + + K K KDG K +D+ +
Sbjct: 621 --KDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDPKVKLKDGLVRKEKEKHKDKKK 678
Query: 470 DRHSHKKDK-SLEKEAHKD 523
DR KKDK EKE KD
Sbjct: 679 DREKGKKDKDKREKEKVKD 697
>AL390294-1|CAH73142.1| 929|Homo sapiens TAF3 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 140kD
protein.
Length = 929
Score = 31.9 bits (69), Expect = 7.0
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = +2
Query: 116 LHQPEQXXXRITLPLQSNERTSTPISTKKRIKKAVEDAAGQEIEEDQEIKILN-VQETEM 292
LH+ + ++ ++ ++ + TK + K+ D ++ + + K + V+E E
Sbjct: 505 LHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKE- 563
Query: 293 IRKIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVN-EIKTKXKDGARIKNVVLIRDRSR 469
K K R+ +K + + K K+ + + K K KDG K +D+ +
Sbjct: 564 --KDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDPKVKLKDGLVRKEKEKHKDKKK 621
Query: 470 DRHSHKKDK-SLEKEAHKD 523
DR KKDK EKE KD
Sbjct: 622 DREKGKKDKDKREKEKVKD 640
>AL353754-1|CAH73451.1| 929|Homo sapiens TAF3 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 140kD
protein.
Length = 929
Score = 31.9 bits (69), Expect = 7.0
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = +2
Query: 116 LHQPEQXXXRITLPLQSNERTSTPISTKKRIKKAVEDAAGQEIEEDQEIKILN-VQETEM 292
LH+ + ++ ++ ++ + TK + K+ D ++ + + K + V+E E
Sbjct: 505 LHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKE- 563
Query: 293 IRKIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVN-EIKTKXKDGARIKNVVLIRDRSR 469
K K R+ +K + + K K+ + + K K KDG K +D+ +
Sbjct: 564 --KDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDPKVKLKDGLVRKEKEKHKDKKK 621
Query: 470 DRHSHKKDK-SLEKEAHKD 523
DR KKDK EKE KD
Sbjct: 622 DREKGKKDKDKREKEKVKD 640
>AL159172-1|CAI15661.1| 929|Homo sapiens TAF3 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 140kD
protein.
Length = 929
Score = 31.9 bits (69), Expect = 7.0
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = +2
Query: 116 LHQPEQXXXRITLPLQSNERTSTPISTKKRIKKAVEDAAGQEIEEDQEIKILN-VQETEM 292
LH+ + ++ ++ ++ + TK + K+ D ++ + + K + V+E E
Sbjct: 505 LHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKE- 563
Query: 293 IRKIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVN-EIKTKXKDGARIKNVVLIRDRSR 469
K K R+ +K + + K K+ + + K K KDG K +D+ +
Sbjct: 564 --KDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDPKVKLKDGLVRKEKEKHKDKKK 621
Query: 470 DRHSHKKDK-SLEKEAHKD 523
DR KKDK EKE KD
Sbjct: 622 DREKGKKDKDKREKEKVKD 640
>AL117661-1|CAB56032.1| 681|Homo sapiens hypothetical protein
protein.
Length = 681
Score = 31.9 bits (69), Expect = 7.0
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = +2
Query: 116 LHQPEQXXXRITLPLQSNERTSTPISTKKRIKKAVEDAAGQEIEEDQEIKILN-VQETEM 292
LH+ + ++ ++ ++ + TK + K+ D ++ + + K + V+E E
Sbjct: 483 LHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKE- 541
Query: 293 IRKIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVN-EIKTKXKDGARIKNVVLIRDRSR 469
K K R+ +K + + K K+ + + K K KDG K +D+ +
Sbjct: 542 --KDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDPKVKLKDGLVRKEKEKHKDKKK 599
Query: 470 DRHSHKKDK-SLEKEAHKD 523
DR KKDK EKE KD
Sbjct: 600 DREKGKKDKDKREKEKVKD 618
>AJ292190-1|CAC34475.1| 727|Homo sapiens TAFII140 protein protein.
Length = 727
Score = 31.9 bits (69), Expect = 7.0
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = +2
Query: 116 LHQPEQXXXRITLPLQSNERTSTPISTKKRIKKAVEDAAGQEIEEDQEIKILN-VQETEM 292
LH+ + ++ ++ ++ + TK + K+ D ++ + + K + V+E E
Sbjct: 505 LHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKE- 563
Query: 293 IRKIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVN-EIKTKXKDGARIKNVVLIRDRSR 469
K K R+ +K + + K K+ + + K K KDG K +D+ +
Sbjct: 564 --KDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDPKVKLKDGLVRKEKEKHKDKKK 621
Query: 470 DRHSHKKDK-SLEKEAHKD 523
DR KKDK EKE KD
Sbjct: 622 DREKGKKDKDKREKEKVKD 640
>BC009306-1|AAH09306.1| 522|Homo sapiens NOP5/NOP58 protein
protein.
Length = 522
Score = 31.5 bits (68), Expect = 9.2
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 149 TLPLQSNERTSTPISTKKRI--KKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRK 322
TLP S +R + + I KKA + ++EE++E K+ +ET + +K K K+K
Sbjct: 435 TLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKK 494
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,075,676
Number of Sequences: 237096
Number of extensions: 2150006
Number of successful extensions: 5712
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 4813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5590
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 24884849328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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