Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C03_e403_05.seq
         (1654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   4.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   4.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   7.6  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 428 ARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSR 541
           +R +N    +DR  ++  ++K+K LE+  ++   S+SR
Sbjct: 5   SRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSR 42


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 428 ARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSR 541
           +R +N    +DR  ++  ++K+K LE+  ++   S+SR
Sbjct: 5   SRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSR 42


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 221 EDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKI 355
           ED   + IEE + + ILN +    I+    +  K TV  VI I +
Sbjct: 191 EDTKNKLIEESKTVFILNNEIIRSIQGTGTIILKKTVCFVIPIML 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,732
Number of Sequences: 438
Number of extensions: 3891
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 58496625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)