Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_C03_e403_05.seq
(1654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 51 2e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 49 1e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 36 0.058
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 36 0.10
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.10
At4g25340.1 68417.m03647 immunophilin-related / FKBP-type peptid... 34 0.24
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 34 0.24
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 34 0.24
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.41
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 33 0.41
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 33 0.54
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 32 0.95
At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) cont... 32 0.95
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 31 1.7
At5g19480.1 68418.m02321 expressed protein 31 2.2
At3g10770.2 68416.m01297 expressed protein 31 2.9
At3g10770.1 68416.m01296 expressed protein 31 2.9
At1g56660.1 68414.m06516 expressed protein 30 3.8
At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai... 30 5.1
At1g06980.1 68414.m00743 expressed protein similar to hypothetic... 30 5.1
At5g12230.1 68418.m01435 expressed protein 29 6.7
At5g12050.1 68418.m01409 expressed protein 29 8.8
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 8.8
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr... 29 8.8
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 51.2 bits (117), Expect = 2e-06
Identities = 29/87 (33%), Positives = 40/87 (45%)
Frame = +2
Query: 461 RSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQRIRAKDL 640
R R++ S + + EKE R R TVF Q+ + +D+
Sbjct: 125 REREKRSSSRSRREEKEPEVVERGSRRHRDKKDEPEADPERDQRTVFAYQMPLKATERDV 184
Query: 641 EEFFSSVGKVRDVRMITCXXTRRFKGI 721
EFFS GKVRDVR+I +RR KG+
Sbjct: 185 YEFFSKAGKVRDVRLIMDRNSRRSKGV 211
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 48.8 bits (111), Expect = 1e-05
Identities = 33/89 (37%), Positives = 44/89 (49%)
Frame = +2
Query: 455 RDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQRIRAK 634
RDR R RH KK+ +E EA + + TVF Q++ R +
Sbjct: 156 RDRDRRRHKDKKEDKVEPEADPERDQR-------------------TVFAYQIALRATER 196
Query: 635 DLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
D+ EFFS GKVRDVR+I +RR +GI
Sbjct: 197 DVYEFFSRAGKVRDVRIIMDRISRRSRGI 225
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 36.3 bits (80), Expect = 0.058
Identities = 29/100 (29%), Positives = 43/100 (43%)
Frame = +2
Query: 419 KDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXXXXTV 598
K+ AR ++ R RSR R + +SL + S+SRG T+
Sbjct: 18 KERARSRSRSRSRSRSRPR-LRSRSRSLPRPVSP---SRSRGRSRSRSRGSEVENPGTTL 73
Query: 599 FCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKG 718
+ LS R+ KDLE F+ GKV ++ TR +G
Sbjct: 74 YVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 113
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 35.5 bits (78), Expect = 0.10
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 3/178 (1%)
Frame = +2
Query: 161 QSNERTSTPISTKKR---IKKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTV 331
+S+ TP+ KK +K A +++ E E + + ++ +++ K + +
Sbjct: 240 ESSSDEETPVVKKKPTTVVKDAKAESSSSEEESSSDDEPTPAKKPTVVKNAKPAAKDSSS 299
Query: 332 NVVIGIKIADTEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKE 511
+ + + K +K V+ +K + + + ++ S+D K K + E
Sbjct: 300 SEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESKDEKVTPKKKDSDVE 359
Query: 512 AHKDYRSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRM 685
D KS T+F LS +I D+E FF G+V DVR+
Sbjct: 360 M-VDAEQKSNAKQPKTPTNQTQGGSK-TLFAGNLSYQIARSDIENFFKEAGEVVDVRL 415
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.5 bits (78), Expect = 0.10
Identities = 40/184 (21%), Positives = 65/184 (35%)
Frame = +2
Query: 167 NERTSTPISTKKRIKKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIG 346
++ +S KK K + AA D + + E +K K +
Sbjct: 160 DDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKAAPAAAKAASSSDSS 219
Query: 347 IKIADTEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDY 526
+ +D E ++ K + + K K + ++ D S D K KS + E
Sbjct: 220 DEDSDEESEDEKPAQKKADTKASKKSSSD-ESSESEEDESEDEEETPKKKSSDVEMVDAE 278
Query: 527 RSKSRGXXXXXXXXXXXXXXXXTVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTR 706
+S ++ T+F LS I D+E FF G+V DVR T
Sbjct: 279 KSSAK---QPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDG 335
Query: 707 RFKG 718
F+G
Sbjct: 336 SFRG 339
>At4g25340.1 68417.m03647 immunophilin-related / FKBP-type
peptidyl-prolyl cis-trans isomerase-related immunophilin
FKBP46 - Spodoptera frugiperda (fall
armyworm),PIR2:A55320
Length = 477
Score = 34.3 bits (75), Expect = 0.24
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Frame = +2
Query: 191 STKKRIKKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEI 370
S KKR KA E GQE +K KN K K V+ + +
Sbjct: 244 SNKKRKAKAAEQDDGQE-------------SANKSKKKKNQKEKKKGENVLNEEAGQVQT 290
Query: 371 KNVKRKKIVNEI--KTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRG 544
NV +K+ +++I TK +DG N + ++ D+ + KK K+ +K+ D ++ G
Sbjct: 291 GNVLKKQDISQISSNTKAQDGT-ANNAMSESSKTPDKSAEKKTKNKKKKKPSDEAAEISG 349
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 34.3 bits (75), Expect = 0.24
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKG 718
+++ LS R+ +DLE+ F+ GKV DV ++ TR +G
Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRG 87
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.3 bits (75), Expect = 0.24
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKG 718
+++ LS R+ +DLE+ F+ GKV DV ++ TR +G
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRG 117
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 33.5 bits (73), Expect = 0.41
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 608 QLSQRIRAKDLEEFFSSVGKVRDVRM 685
+LS R R +DLE FS G+VRDV M
Sbjct: 17 RLSSRTRTRDLERLFSRYGRVRDVDM 42
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 33.5 bits (73), Expect = 0.41
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 608 QLSQRIRAKDLEEFFSSVGKVRDVRM 685
+LS R R +DLE FS G+VRDV M
Sbjct: 17 RLSSRTRTRDLERLFSRYGRVRDVDM 42
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 33.1 bits (72), Expect = 0.54
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRMIT-CXXTRRFKGICL 727
TV S ++ +D+E FFS GKV VRM +R F G+ L
Sbjct: 117 TVAASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVAL 162
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 32.3 bits (70), Expect = 0.95
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +2
Query: 419 KDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSRGXXXXXXXXXXXXXX-XXT 595
K+ AR ++ R RSR R + +SL + S+SRG T
Sbjct: 18 KERARSRSRSRSRSRSRPR-LRSRSRSLPRPVSP---SRSRGRSRSRSRGRSEVENPGTT 73
Query: 596 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKG 718
++ LS R+ KDLE F+ GKV ++ TR +G
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
>At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4)
contains Pfam domain PF00098: Zinc knuckle; identical to
cDNA CAX-interacting protein 4 GI:27651998
Length = 332
Score = 32.3 bits (70), Expect = 0.95
Identities = 30/111 (27%), Positives = 47/111 (42%)
Frame = +2
Query: 209 KKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEIKNVKRK 388
K VE+ + +E EE + E E I + K+KG G + T K+K
Sbjct: 130 KGEVEEVSSEEEEESESSDSDVDSEMERIIAERFGKKKG------GSSVKKTSSVRKKKK 183
Query: 389 KIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYRSKSR 541
++ +E + G R + R + R SHK+ E E ++ RSK R
Sbjct: 184 RVSDESDSDSDSGDRKRR----RRSMKKRSSHKRRSLSESEDEEEGRSKRR 230
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.5 bits (68), Expect = 1.7
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +2
Query: 593 TVFCMQLSQRIRAKDLEEFFSSVGKVRDVRM 685
T+F +LS++ + D+ +FFS VG+V +VR+
Sbjct: 65 TLFVSELSRQTKISDIIDFFSDVGEVVNVRI 95
>At5g19480.1 68418.m02321 expressed protein
Length = 207
Score = 31.1 bits (67), Expect = 2.2
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 362 TEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHK-KDKSLEKEAHKDYRSKS 538
+E K+ RK ++ K K KD K+ +DR +D+ K +DK EK H D + K+
Sbjct: 121 SESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSGHHDKKRKN 179
Query: 539 RG 544
G
Sbjct: 180 NG 181
>At3g10770.2 68416.m01297 expressed protein
Length = 325
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 347 IKIADTEIKNVKRKKIVNE--IKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEK 508
+++ +T I + + VN + +D R V +IRDR +DR+ D+S ++
Sbjct: 183 LEVRNTCINRNETEVAVNNSPVDAVTRDSGRTSRVAIIRDREKDRYDPDYDRSYDR 238
>At3g10770.1 68416.m01296 expressed protein
Length = 333
Score = 30.7 bits (66), Expect = 2.9
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 347 IKIADTEIKNVKRKKIVNE--IKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEK 508
+++ +T I + + VN + +D R V +IRDR +DR+ D+S ++
Sbjct: 183 LEVRNTCINRNETEVAVNNSPVDAVTRDSGRTSRVAIIRDREKDRYDPDYDRSYDR 238
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 30.3 bits (65), Expect = 3.8
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Frame = +2
Query: 164 SNERTSTPISTKKRIKKAVEDAAGQEIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVI 343
S E+ K+ KK +D +G E ++ + K +E + K VK K
Sbjct: 163 SQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNEDKKVKGKKEKGEKG 222
Query: 344 GIKIADTEIKNVKRKKIVNEIKTKX--KDGARIKNVVLIRDRSR--DRHSHKKDKSLEKE 511
++ D E K + + E+K K K+ + K+ ++ + D+ +KD+S EKE
Sbjct: 223 DLEKEDEE-KKKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKPDKEKKEKDESTEKE 281
Query: 512 AHKDYRSKSRG 544
K K +G
Sbjct: 282 DKKLKGKKGKG 292
>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 225
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 380 KRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHKKDKSLEKE 511
+ KK++NEIK K G V+ +D R RH +K L+ +
Sbjct: 40 QEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQ 83
>At1g06980.1 68414.m00743 expressed protein similar to hypothetical
protein GI:2347189 from [Arabidopsis thaliana]
Length = 169
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 149 TLPLQSNERTSTPISTKKRIKKAVEDAAGQEIEEDQE 259
+LP + R TP KK ++ DAAG+EI+ D+E
Sbjct: 85 SLPEKKRRRKDTP-RRKKNLQNPSADAAGREIKGDEE 120
>At5g12230.1 68418.m01435 expressed protein
Length = 221
Score = 29.5 bits (63), Expect = 6.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 362 TEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRHSHK-KDKSLEKEAHKDYRSKS 538
+E K+ RK ++ + K KD K+ +DRS+D+ K +D+ +K H D S
Sbjct: 120 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSGDHS 179
Query: 539 R 541
+
Sbjct: 180 K 180
>At5g12050.1 68418.m01409 expressed protein
Length = 362
Score = 29.1 bits (62), Expect = 8.8
Identities = 17/76 (22%), Positives = 30/76 (39%)
Frame = +2
Query: 299 KIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVNEIKTKXKDGARIKNVVLIRDRSRDRH 478
+IK R VNV++ E +K +DG R + R+ RD H
Sbjct: 236 RIKRSVRFSPVNVIVPESFTSKEEDYFSNGNARKSVKKNVEDGGRRSVEEIAREFLRDYH 295
Query: 479 SHKKDKSLEKEAHKDY 526
+ ++ ++ +DY
Sbjct: 296 KNHENSLVKTNGFEDY 311
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.1 bits (62), Expect = 8.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 596 VFCMQLSQRIRAKDLEEFFSSVGKVRDVRMITCXXTRRFKGI 721
+F L ++L E FS+ GK+ +V ++ T+R +GI
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGI 304
>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
protein / kinesin motor family protein kinesin,
Syncephalastrum racemosum, AJ225894
Length = 941
Score = 29.1 bits (62), Expect = 8.8
Identities = 23/97 (23%), Positives = 48/97 (49%)
Frame = +2
Query: 239 EIEEDQEIKILNVQETEMIRKIKNVKRKGTVNVVIGIKIADTEIKNVKRKKIVNEIKTKX 418
++++DQ +++ + ++ K+KN K++ N K+ADT V KKI ++
Sbjct: 529 QLQKDQ-CDLMHDKAIQLEMKLKNTKQQQLENSAYEAKLADT--SQVYEKKIAELVQRVE 585
Query: 419 KDGARIKNVVLIRDRSRDRHSHKKDKSLEKEAHKDYR 529
+ AR N ++ S K+ KS+ ++ +Y+
Sbjct: 586 DEQARSTNAEHQLTEMKNILS-KQQKSIHEQEKGNYQ 621
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,137,961
Number of Sequences: 28952
Number of extensions: 301988
Number of successful extensions: 1043
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 85
effective length of database: 9,609,640
effective search space used: 4468482600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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