Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C02_e395_06.seq
         (1556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910...    31   2.5  
11_04_0039 + 12679350-12680057,12680136-12680582,12680670-126815...    30   4.3  
01_01_0470 - 3464634-3466520                                           30   4.3  
08_02_1059 + 24006493-24006999                                         29   7.5  
06_03_1347 - 29492460-29494685                                         29   7.5  

>11_06_0143 +
           20589574-20589684,20590256-20590873,20590943-20591010,
           20591159-20591234,20591311-20591372,20591452-20591603,
           20591889-20592052,20592129-20592317,20592417-20592538,
           20592620-20592827,20593238-20593291,20593457-20593626,
           20594265-20594355,20595405-20595529,20596372-20596444,
           20596822-20596914,20597482-20597728,20598305-20598364,
           20598461-20598590,20599008-20599014
          Length = 939

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 207 GSEDSLDDESKTEPKAASTPQGGRSSRR 290
           G ED +D+++KT  KAA   +GG S  R
Sbjct: 192 GEEDKMDEDAKTPSKAAGRGRGGASGGR 219


>11_04_0039 +
           12679350-12680057,12680136-12680582,12680670-12681556,
           12681635-12681805,12681872-12682160,12682390-12682428
          Length = 846

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 225 DDESKTEPKAASTPQGGRSSRRKPAAPQWVNPDWQDEKPRXPDXVIINGVCVMRSXDFXR 404
           +D ++ + KA   P   + SR+  ++PQ +  D  +EK R     +   +   R  D  +
Sbjct: 519 EDRTEADSKAIHEPPPMKKSRKAHSSPQRITLDKPEEKGRGRGGKVQTSLLAPRKLDLGK 578

Query: 405 ESXET 419
              ET
Sbjct: 579 GQEET 583


>01_01_0470 - 3464634-3466520
          Length = 628

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 144 WTSRALQTDLSRTXRRDETATS--CRITCRPGGY 49
           WT R L   L R  ++ ETA    C + CRPGGY
Sbjct: 341 WTPR-LVCKLLRAFKKAETAWEFFCWVACRPGGY 373


>08_02_1059 + 24006493-24006999
          Length = 168

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 288 VCSSVPPEASTPPSAQSLIRHPTSPRIRGYF 196
           + + V P  +TPPSA SL R  T+P +   F
Sbjct: 42  LAADVAPMEATPPSASSLSRRGTAPPVANRF 72


>06_03_1347 - 29492460-29494685
          Length = 741

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 132 ALQTDLSRTXRRDETATSCRITCRPGGYH 46
           A++TD SR  RRD++    R  C   G+H
Sbjct: 114 AVRTDKSRRSRRDDSVIMRRFVCTREGFH 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,422,385
Number of Sequences: 37544
Number of extensions: 234423
Number of successful extensions: 1103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5023712764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)