Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C02_e395_06.seq
         (1556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15299| Best HMM Match : LIM (HMM E-Value=0.44)                      32   1.1  
SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)                   30   4.4  
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   30   4.4  

>SB_15299| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 344

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 183 LRNRQRPXHVSEAWTSRALQTDLSRTXRRDE 91
           LRNR  P H+ E WT+ A+ T +SR    D+
Sbjct: 196 LRNRP-PDHILEGWTTNAVYTGISRVRHSDQ 225


>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 712

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 198 SNLGSEDSLDDESKTEPKAASTPQG 272
           SNL  ED++DDE  TE     TP+G
Sbjct: 588 SNLDDEDNVDDEKITEKLELETPEG 612


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 198 SNLGSEDSLDDESKTEPKAASTPQG 272
           SNL  ED++DDE  TE     TP+G
Sbjct: 845 SNLDDEDNVDDEKITEKLELETPEG 869


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,424,957
Number of Sequences: 59808
Number of extensions: 241016
Number of successful extensions: 940
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5082457441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)