Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C02_e395_06.seq
         (1556 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL135927-19|CAI15539.1|  220|Homo sapiens polyamine-modulated fa...    32   6.5  
AL135927-16|CAI15535.1|  180|Homo sapiens polyamine-modulated fa...    32   6.5  
AK124646-1|BAC85916.1|  180|Homo sapiens protein ( Homo sapiens ...    32   6.5  

>AL135927-19|CAI15539.1|  220|Homo sapiens polyamine-modulated
           factor 1 protein.
          Length = 220

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +3

Query: 204 LGSEDSLDDESKT--EPKAASTPQGGRSSRRKPAAPQWVNPDWQ 329
           L + D + +E K   EP    TP G     R+P    W  P WQ
Sbjct: 105 LNALDKIVEEGKVRKEPACNGTPCGAMCRNRRPRTSSWQMPSWQ 148


>AL135927-16|CAI15535.1|  180|Homo sapiens polyamine-modulated
           factor 1 protein.
          Length = 180

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +3

Query: 204 LGSEDSLDDESKT--EPKAASTPQGGRSSRRKPAAPQWVNPDWQ 329
           L + D + +E K   EP    TP G     R+P    W  P WQ
Sbjct: 105 LNALDKIVEEGKVRKEPACNGTPCGAMCRNRRPRTSSWQMPSWQ 148


>AK124646-1|BAC85916.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42655 fis, clone BRACE3045033, moderately
           similar to Homo sapiens polyamine-modulated factor 1
           (PMF1). ).
          Length = 180

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +3

Query: 204 LGSEDSLDDESKT--EPKAASTPQGGRSSRRKPAAPQWVNPDWQ 329
           L + D + +E K   EP    TP G     R+P    W  P WQ
Sbjct: 105 LNALDKIVEEGKVRKEPACNGTPCGAMCRNRRPRTSSWQMPSWQ 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,154,644
Number of Sequences: 237096
Number of extensions: 1189041
Number of successful extensions: 4703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4701
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 23293881950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)