Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C02_e395_06.seq
         (1556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78815.1 68414.m09187 expressed protein contains Pfam profile...    31   1.6  
At3g46580.1 68416.m05056 methyl-CpG-binding domain-containing pr...    31   2.7  
At5g11990.1 68418.m01402 proline-rich family protein contains pr...    29   6.3  

>At1g78815.1 68414.m09187 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 195

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 273 PPEASTPPSAQSLIRHPTSPRIRGYFLHRHLRNRQRPXHVSEAWTSRAL 127
           P +  +PP+  +L R+ +  R       ++LRN+Q P H+S+  ++  L
Sbjct: 26  PHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHIL 74


>At3g46580.1 68416.m05056 methyl-CpG-binding domain-containing
           protein weak similarity to SP|P51608 Methyl-CpG-binding
           protein 2 (MeCP-2 protein) (MeCP2) {Homo sapiens};
           contains Pfam profile PF01429: Methyl-CpG binding domain
          Length = 182

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 228 DESKTEPKAASTPQGGRSSRRK-PAAPQWVNPDWQDE 335
           D+++  P+  +TP   +S +R  P    W+ PDW+ E
Sbjct: 6   DQAQPPPENPATPVDSKSRKRATPGDDNWLPPDWRTE 42


>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 342 VASRPANQG*PTVALQVSVCSSVPPEASTPPSAQS-LIRHPTSPRI 208
           VAS P++Q      L +S CS+ P   S PPS  S  +  P SP +
Sbjct: 16  VASSPSDQTNVLTPLCISECSTCPTICSPPPSKPSPSMSPPPSPSL 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,679,111
Number of Sequences: 28952
Number of extensions: 155397
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4183148928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)