Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C01_e387_05.seq
         (1580 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08473 Cluster: RNA-binding protein squid; n=22; Endopt...    54   1e-05
UniRef50_UPI0000DB6DF2 Cluster: PREDICTED: similar to squid CG16...    46   0.004
UniRef50_UPI0001560453 Cluster: PREDICTED: similar to MGC50722 p...    36   3.9  

>UniRef50_Q08473 Cluster: RNA-binding protein squid; n=22;
           Endopterygota|Rep: RNA-binding protein squid -
           Drosophila melanogaster (Fruit fly)
          Length = 344

 Score = 54.0 bits (124), Expect = 1e-05
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 59  TRQVVNELLKTPKQTIGGKEVDVKRATPKPD 151
           + QVV +LLKTPKQ I GKEVDVKRATPKP+
Sbjct: 186 SEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216


>UniRef50_UPI0000DB6DF2 Cluster: PREDICTED: similar to squid
           CG16901-PC, isoform C; n=2; Apocrita|Rep: PREDICTED:
           similar to squid CG16901-PC, isoform C - Apis mellifera
          Length = 320

 Score = 45.6 bits (103), Expect = 0.004
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = +2

Query: 59  TRQVVNELLKTPKQTIGGKEVDVKRATPKPD 151
           +++VV +LLKTPKQTI GKEVDVK+    PD
Sbjct: 191 SKEVVYKLLKTPKQTINGKEVDVKKVKVNPD 221


>UniRef50_UPI0001560453 Cluster: PREDICTED: similar to MGC50722
           protein; n=1; Equus caballus|Rep: PREDICTED: similar to
           MGC50722 protein - Equus caballus
          Length = 1130

 Score = 35.5 bits (78), Expect = 3.9
 Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 281 PARTRNRRSPGCPTXDPRSRRGLRARPEPPC--RRGPRARSY 162
           PA  R  RSP  P   P    G+R RP PPC   RGP  R Y
Sbjct: 556 PAWPRPARSP--PRGAPGKENGVRVRPPPPCPQPRGPLGRPY 595


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,456,119
Number of Sequences: 1657284
Number of extensions: 5466577
Number of successful extensions: 15136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15082
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 170183938450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)