Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C01_e387_05.seq
         (1580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.21 
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.1  
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.5  
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      32   1.5  

>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 34.7 bits (76), Expect = 0.21
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 236 DPRSRRGLRARPEPPCRRGPRARSYPXAHQAWAWLA 129
           DPRSR   R R +P  R  PRAR+ P   +   W A
Sbjct: 225 DPRSRNDPRTRNDPRTRNDPRARNDPRTRKDSRWFA 260



 Score = 31.1 bits (67), Expect = 2.5
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 275 RTRN---RRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSYPXA 153
           RTRN    R+      DPR+R   R+R +P  R  PR R+ P A
Sbjct: 203 RTRNDPRTRNDPWTQNDPRTRNDPRSRNDPRTRNDPRTRNDPRA 246


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 284  LPARTRNRRS-PGCPTXDPRSRRGLRARPEPPCRRG-PRARSYPXAHQA 144
            LP  T +RR  PG  T  PR  R    RP PP  RG  R+ S   + QA
Sbjct: 1740 LPVNTTDRRPRPGPETEPPRRSRAPPPRPPPPSSRGHSRSGSTAGSSQA 1788


>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 59  TRQVVNELLKTPKQTIGGKEVDVKRATPKPD 151
           TR V+ + ++     I GKEV+VKRA P+ D
Sbjct: 68  TRNVLKDKVENGAHRIDGKEVEVKRAIPRDD 98


>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 269 RNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSYP 159
           R R  P  P  DPR+R   R R +P  R  PR R+ P
Sbjct: 708 RTRNDPRTPN-DPRTRNDPRTRIDPRTRNDPRTRNDP 743



 Score = 29.5 bits (63), Expect = 7.8
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 275 RTRN---RRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSYP 159
           RTRN    R+      DPR+R   R R +P  R  PR R+ P
Sbjct: 757 RTRNDPRTRNDPWTRNDPRTRNDPRTRNDPRTRNDPRTRNDP 798


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,205
Number of Sequences: 59808
Number of extensions: 172155
Number of successful extensions: 1896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1889
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5176359657
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)