Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C01_e387_05.seq
         (1580 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z85986-1|CAI19115.1|  164|Homo sapiens splicing factor, arginine...    33   2.9  
L10838-1|AAA36648.1|  164|Homo sapiens pre-mRNA splicing factor ...    33   2.9  
BT007017-1|AAP35663.1|  164|Homo sapiens splicing factor, argini...    33   2.9  
BC069018-1|AAH69018.1|  164|Homo sapiens splicing factor, argini...    33   2.9  
BC000914-1|AAH00914.1|  164|Homo sapiens splicing factor, argini...    33   2.9  
AF107405-1|AAD44523.1|  164|Homo sapiens pre-mRNA splicing facto...    33   2.9  

>Z85986-1|CAI19115.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 275 RTRNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSY 162
           R+RNR  P  P+   R R   R R  PP RR PR RS+
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRRSF 121


>L10838-1|AAA36648.1|  164|Homo sapiens pre-mRNA splicing factor
           protein.
          Length = 164

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 275 RTRNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSY 162
           R+RNR  P  P+   R R   R R  PP RR PR RS+
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRRSF 121


>BT007017-1|AAP35663.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 275 RTRNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSY 162
           R+RNR  P  P+   R R   R R  PP RR PR RS+
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRRSF 121


>BC069018-1|AAH69018.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 275 RTRNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSY 162
           R+RNR  P  P+   R R   R R  PP RR PR RS+
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRRSF 121


>BC000914-1|AAH00914.1|  164|Homo sapiens splicing factor,
           arginine/serine-rich 3 protein.
          Length = 164

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 275 RTRNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSY 162
           R+RNR  P  P+   R R   R R  PP RR PR RS+
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRRSF 121


>AF107405-1|AAD44523.1|  164|Homo sapiens pre-mRNA splicing factor
           protein.
          Length = 164

 Score = 33.1 bits (72), Expect = 2.9
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -1

Query: 275 RTRNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSY 162
           R+RNR  P  P+   R R   R R  PP RR PR RS+
Sbjct: 86  RSRNRGPP--PSWGRRPRDDYRRRSPPPRRRSPRRRSF 121


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,341,200
Number of Sequences: 237096
Number of extensions: 991369
Number of successful extensions: 2505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2498
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23575120416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)