Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C01_e387_05.seq
         (1580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    32   0.97 
Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...    30   3.9  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    30   5.2  
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p...    29   9.1  
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...    29   9.1  

>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 32.3 bits (70), Expect = 0.97
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 281 PARTRNRR-SPGCPTXDPRSRRGLRARPEPPCRRGPRARS 165
           P+  R RR SP  P  D R R G R R     RR P ARS
Sbjct: 89  PSPPRRRRPSPSPPRRDRRDRSGSRQRRRASPRRSPAARS 128


>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 233 PRSRRGLRARPEPPCRRGPRARSYPXAHQAW 141
           P+ +RG +ARP+   R  PR+R+    H AW
Sbjct: 101 PKPQRGSKARPQKQKR--PRSRTLTAVHDAW 129


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -1

Query: 281 PARTRNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSYPXA 153
           P R R  RSP   +  P  R+  R+R  PP RR  R+RS P A
Sbjct: 118 PRRRRISRSPVRRSRSPPRRQVSRSRSPPP-RRQQRSRSPPPA 159



 Score = 29.5 bits (63), Expect = 6.9
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 269 RNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSYPXAHQ 147
           R RRSP  P     SR  +R    PP R+  R+RS P   Q
Sbjct: 110 RTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQ 150


>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
           protein F02E9.4b protein.
          Length = 1507

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 257 SPGCPTXDPRSRRGLRARPEPPCRRGPRARSYPXAHQAWAWL 132
           S GCP  +PR ++G R +  P  R+ P     P   +A A+L
Sbjct: 254 SAGCPQREPRQQQGGRRQNRPGRRKKPEGP--PRVDEALAYL 293


>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
           protein F02E9.4a protein.
          Length = 1505

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 257 SPGCPTXDPRSRRGLRARPEPPCRRGPRARSYPXAHQAWAWL 132
           S GCP  +PR ++G R +  P  R+ P     P   +A A+L
Sbjct: 254 SAGCPQREPRQQQGGRRQNRPGRRKKPEGP--PRVDEALAYL 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,305,807
Number of Sequences: 27780
Number of extensions: 125465
Number of successful extensions: 265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4577094018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)