Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_C01_e387_05.seq
         (1580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.78 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   7.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   7.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 141 GVARFTSTSLPPIVCLGVFSSSFTTCL 61
           G   F  T +PP  CL VFSS   +C+
Sbjct: 135 GDMTFDQTGIPPTTCL-VFSSGSVSCV 160


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 284 LPARTRNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSY 162
           L   + + R+P     +P ++RG    P P  RR  +   Y
Sbjct: 877 LQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVKY 917


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 284  LPARTRNRRSPGCPTXDPRSRRGLRARPEPPCRRGPRARSY 162
            L   + + R+P     +P ++RG    P P  RR  +   Y
Sbjct: 915  LQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVKY 955


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,743
Number of Sequences: 438
Number of extensions: 1576
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55625625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)