Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B12_e474_04.seq
         (1443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    30   3.5  
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    30   3.5  
Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical pr...    29   8.2  
AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical ...    29   8.2  
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    29   8.2  
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    29   8.2  

>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase protein.
          Length = 1262

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +1

Query: 409  RVQHFQENIGLEPLFGNARNLVTASAPPDPVTPHAPRKRASRLNKEPSRKRAL 567
            +V+ FQE     P     R L    APP P TP     R+S   + PSR R L
Sbjct: 1212 QVKTFQEEDDEAPKRSTTRQLKPLVAPPIPATPTTRTTRSSA--RTPSRSRNL 1262


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein 1
            protein.
          Length = 1262

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +1

Query: 409  RVQHFQENIGLEPLFGNARNLVTASAPPDPVTPHAPRKRASRLNKEPSRKRAL 567
            +V+ FQE     P     R L    APP P TP     R+S   + PSR R L
Sbjct: 1212 QVKTFQEEDDEAPKRSTTRQLKPLVAPPIPATPTTRTTRSSA--RTPSRSRNL 1262


>Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical
           protein K01B6.1 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 454 GNARNLVTASAPPDPVTPHAPRKRASRLNKEPSRKRAL 567
           G  R +   S+P  P +P  P +R S+ +  PSR+  +
Sbjct: 231 GRGRPMQGRSSPKSPTSPTQPGRRGSQASSLPSRRNTV 268


>AL022716-4|CAA18773.1|  703|Caenorhabditis elegans Hypothetical
           protein C24F3.4 protein.
          Length = 703

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 130 MGPRMKLPKKPQTNGDTADIDDLQERVTTNIVSHKMKRTVAEVVVPAV 273
           MGP     K  Q  GD   ID+++E+V      +++ R  A V  PA+
Sbjct: 615 MGPYGMFLKLLQLWGDKYSIDEIEEKVNKFFWRYRVNRHKATVSTPAI 662


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +1

Query: 442 EPLFGNARNLVTASAPPD-----PVTPHAPRKRASRLNKEPSRK 558
           E  F NA    T   PPD     P   H PRK++   +  P+RK
Sbjct: 326 EGKFNNASANATRPRPPDIPPPLPPIEHVPRKKSRNASSSPTRK 369


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +1

Query: 442 EPLFGNARNLVTASAPPD-----PVTPHAPRKRASRLNKEPSRK 558
           E  F NA    T   PPD     P   H PRK++   +  P+RK
Sbjct: 350 EGKFNNASANATRPRPPDIPPPLPPIEHVPRKKSRNASSSPTRK 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,749,723
Number of Sequences: 27780
Number of extensions: 354714
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4121044488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)