Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B12_e474_04.seq
         (1443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   8.6  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 490 PDPVTPHAPRKRASRLNKEPSRKRALKI 573
           P P  PH   +R + L  EP   R + I
Sbjct: 78  PQPRPPHPRLRREAELEAEPGNNRPVYI 105



 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 490 PDPVTPHAPRKRASRLNKEPSRKRALKI 573
           P P  PH   +R + L  EP   R + I
Sbjct: 134 PQPRPPHPRLRREAELEAEPGNNRPVYI 161


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 547 VPCLVAMLVSSEREE*QGREVLKRSP 470
           +PC++ M   S++EE + ++  K SP
Sbjct: 340 LPCILRMSRPSDKEEREAQKSQKPSP 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,932
Number of Sequences: 438
Number of extensions: 4506
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 50122875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)