Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B11_e466_03.seq
         (1524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    99   8e-21
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     99   1e-20
07_03_0078 - 13147741-13148913                                         32   1.4  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   4.2  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   4.2  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.2  
04_03_0191 - 12452369-12452499,12452875-12453077,12453641-124538...    29   9.7  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 99.1 bits (236), Expect = 8e-21
 Identities = 53/102 (51%), Positives = 66/102 (64%)
 Frame = +3

Query: 102 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 281
           P+  + +G+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55

Query: 282 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 407
           YEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE++ V+
Sbjct: 56  YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVI 97


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 53/102 (51%), Positives = 66/102 (64%)
 Frame = +3

Query: 102 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 281
           P+  + +G+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55

Query: 282 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 407
           YEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE++ VL
Sbjct: 56  YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVL 97


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 205 AGLILMALSVIPFLPADIFVVLWPF 131
           AGL+  AL VIP LP  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 613 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 756
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 613 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 756
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK  L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 551 ITIHWPSFYNVV-TGKTLALPNLIALQH 631
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>04_03_0191 -
           12452369-12452499,12452875-12453077,12453641-12453835,
           12454301-12454809
          Length = 345

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 169 FLPADIFVVL--WPFRRPIAISNRGAMISD*PSCRIXCXPGGXPLVXXSGRHRGXXP 5
           FL   + VVL  W +RRP +  NRGA        RI C  GG       GR  G  P
Sbjct: 221 FLSLRVVVVLLAW-WRRPTSSVNRGASSG---RRRISCYGGGSSDAASDGRMEGEGP 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,369,473
Number of Sequences: 37544
Number of extensions: 651308
Number of successful extensions: 1542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)