Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_B11_e466_03.seq
(1524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 106 5e-23
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 32 1.2
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 32 1.2
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical pr... 29 6.6
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein. 29 6.6
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein. 29 6.6
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 29 6.6
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 29 6.6
Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical p... 29 8.7
AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical ... 29 8.7
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 106 bits (254), Expect = 5e-23
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = +3
Query: 114 IAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKR 293
+A+GL KGH T++ +K R R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58
Query: 294 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 407
+E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+
Sbjct: 59 VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVI 96
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 31.9 bits (69), Expect = 1.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1
Query: 540 IGRIGYRAPPRVFFFFFW 487
IG G+ APP VF FFFW
Sbjct: 348 IGAFGHEAPPLVFKFFFW 365
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 31.9 bits (69), Expect = 1.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1
Query: 540 IGRIGYRAPPRVFFFFFW 487
IG G+ APP VF FFFW
Sbjct: 346 IGAFGHEAPPLVFKFFFW 363
>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
protein C34B4.1b protein.
Length = 1099
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 220 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 116
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724
>Z78059-4|CAB01487.2| 995|Caenorhabditis elegans Hypothetical
protein C34B4.1a protein.
Length = 995
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 220 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 116
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 587 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 620
>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
Length = 1045
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 220 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 116
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 637 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 670
>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
Length = 1099
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 220 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 116
MPF L G L+AL++ FLP + +LW +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 129 RKGHKTTKISAGKKGITDKAIKIRPARLKGI----QTKHSKFVRDLVREVVGHAQYEKRA 296
R K + A K+ + ++ + +GI Q +HS+ VR++ + + EK+
Sbjct: 701 RPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKVYANATRKEKKK 760
Query: 297 MELLKVSKDKR 329
+EL++++K K+
Sbjct: 761 VELVRMTKGKK 771
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 129 RKGHKTTKISAGKKGITDKAIKIRPARLKGI----QTKHSKFVRDLVREVVGHAQYEKRA 296
R K + A K+ + ++ + +GI Q +HS+ VR++ + + EK+
Sbjct: 701 RPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKVYANATRKEKKK 760
Query: 297 MELLKVSKDKR 329
+EL++++K K+
Sbjct: 761 VELVRMTKGKK 771
>Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 404 YVAELFTLPLRADVCAEATLQELKGALIFR 315
Y+ LFTLPL A C + +QE + A+IFR
Sbjct: 35 YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63
>AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 404 YVAELFTLPLRADVCAEATLQELKGALIFR 315
Y+ LFTLPL A C + +QE + A+IFR
Sbjct: 35 YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,886,872
Number of Sequences: 27780
Number of extensions: 512962
Number of successful extensions: 1133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4379894956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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