Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B11_e466_03.seq
         (1524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    25   1.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    25   1.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   3.0  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 216 GIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 380
           G+Q K      D +   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 216 GIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 380
           G+Q K      D +   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = +2

Query: 353 PRHTHPREEEA*RAQQRTNTXEEGGRTPSPPRHHSH*VNNKLVYCQKKKKKT 508
           P   HP    +   Q   +T    G T  PP HH H     L +   ++  T
Sbjct: 323 PSQYHPHRGSSPHHQHGNHTM---GPTMGPPHHHHHHQTQSLQHLHYRQPPT 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,810
Number of Sequences: 438
Number of extensions: 6921
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53352750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)