Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B11_e466_03.seq
         (1524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    96   6e-20
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    95   1e-19
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            95   1e-19
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    73   7e-13
At1g34590.1 68414.m04299 hypothetical protein                          30   4.6  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 95.9 bits (228), Expect = 6e-20
 Identities = 51/96 (53%), Positives = 64/96 (66%)
 Frame = +3

Query: 120 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 299
           +GL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 300 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 407
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVL 97


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 95.1 bits (226), Expect = 1e-19
 Identities = 52/96 (54%), Positives = 63/96 (65%)
 Frame = +3

Query: 120 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 299
           +GL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 300 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 407
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL
Sbjct: 58  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVL 93


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 95.1 bits (226), Expect = 1e-19
 Identities = 52/96 (54%), Positives = 63/96 (65%)
 Frame = +3

Query: 120 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 299
           +GL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 300 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 407
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVL 97


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 44/96 (45%), Positives = 58/96 (60%)
 Frame = +3

Query: 120 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 299
           +GL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 300 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 407
           ELLKV+         KR+LGTH RAKRKREE+S+VL
Sbjct: 62  ELLKVA---------KRKLGTHKRAKRKREEMSSVL 88


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 78  EGQSEIMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPAR 209
           E + ++ AP  E A     GH++ +  A K G+TD+A  + PA+
Sbjct: 768 ELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,858,842
Number of Sequences: 28952
Number of extensions: 484065
Number of successful extensions: 1120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4077124416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)