Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B10_e458_04.seq
         (1548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_30147| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.5  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.3  
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.6  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               29   7.6  

>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
 Frame = +2

Query: 716 IPLHLEPVQQHELXDKRLWIGNXDTRVNE--------------SLTCYFTRSGPHAGQPR 853
           +PL   P     + +++LWIGN D R++E                   F  +GP+ G+PR
Sbjct: 373 VPL-AAPEIDDAVSERKLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPR 431

Query: 854 GFAFV 868
           G+ FV
Sbjct: 432 GYCFV 436


>SB_30147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 4   WXXPAVAAALXTSGXPPGCRXFGTRRKCCEVKIMTFTVN 120
           W   AVAAAL     PPGCR     R+  E+   +F +N
Sbjct: 4   WSSTAVAAALELVD-PPGCRNSIDNRRSAELSNFSFGIN 41


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = +3

Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPPXPXXXXXP 1514
            P P   T P+ P  P      T    P P   L PP P     P
Sbjct: 926  PPPIQTTRPTVPTTPTTQASTTRPTPPPPTSALPPPIPATQVPP 969


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPP 1490
            P P   T+ SPP  PL P      P+P P    +PP
Sbjct: 738  PSPSEVTTKSPPAPPLPPKVTPKPPAP-PQFAPVPP 772


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = +3

Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPPXPXXXXXP 1514
            P PP    PSPP  P  P      P P P     PP P     P
Sbjct: 205  PPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPS--PPRPLAAKLP 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,300,090
Number of Sequences: 59808
Number of extensions: 595294
Number of successful extensions: 1257
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5047244110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)