Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B10_e458_04.seq
         (1548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.                  35   0.70 
M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.                  35   0.70 
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.                  35   0.70 
X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    32   6.5  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               32   6.5  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    32   6.5  

>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
          Length = 1270

 Score = 35.1 bits (77), Expect = 0.70
 Identities = 25/129 (19%), Positives = 34/129 (26%)
 Frame = +3

Query: 1128 PGLXSXSXAPXXXPAPXTXXXPGRPSXXXNXXLXXSXPXXPXXXSXXXXXXXXTFXGRIP 1307
            P   + +  P   P+P T   P  P+         + P  P   +               
Sbjct: 940  PPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTT 999

Query: 1308 PLXPXWXXXXRWYLXXXXALXXLXXPXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLP 1487
            P+ P               L     P PP  T+ +PP         T  PSP       P
Sbjct: 1000 PITPP---------TSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTP 1050

Query: 1488 PXPXXXXXP 1514
            P       P
Sbjct: 1051 PPTTTPSSP 1059


>M74027-1|AAA59875.1|  573|Homo sapiens mucin protein.
          Length = 573

 Score = 35.1 bits (77), Expect = 0.70
 Identities = 25/129 (19%), Positives = 34/129 (26%)
 Frame = +3

Query: 1128 PGLXSXSXAPXXXPAPXTXXXPGRPSXXXNXXLXXSXPXXPXXXSXXXXXXXXTFXGRIP 1307
            P   + +  P   P+P T   P  P+         + P  P   +               
Sbjct: 223  PPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTT 282

Query: 1308 PLXPXWXXXXRWYLXXXXALXXLXXPXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLP 1487
            P+ P               L     P PP  T+ +PP         T  PSP       P
Sbjct: 283  PITPP---------TSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTP 333

Query: 1488 PXPXXXXXP 1514
            P       P
Sbjct: 334  PPTTTPSSP 342



 Score = 31.5 bits (68), Expect = 8.6
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +3

Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPPXPXXXXXP 1514
            P PP  T+PSPP         T  PSP     + PP       P
Sbjct: 135  PSPPT-TTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPP 177


>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
          Length = 5179

 Score = 35.1 bits (77), Expect = 0.70
 Identities = 25/129 (19%), Positives = 34/129 (26%)
 Frame = +3

Query: 1128 PGLXSXSXAPXXXPAPXTXXXPGRPSXXXNXXLXXSXPXXPXXXSXXXXXXXXTFXGRIP 1307
            P   + +  P   P+P T   P  P+         + P  P   +               
Sbjct: 1565 PPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTT 1624

Query: 1308 PLXPXWXXXXRWYLXXXXALXXLXXPXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLP 1487
            P+ P               L     P PP  T+ +PP         T  PSP       P
Sbjct: 1625 PITPP---------TSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTP 1675

Query: 1488 PXPXXXXXP 1514
            P       P
Sbjct: 1676 PPTTTPSSP 1684


>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage factor
            I 68 kDa subunit protein.
          Length = 551

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPP 1490
            P PP     +PP  PL P      P P P   +LPP
Sbjct: 226  PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPP 261


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPP 1490
            P PP     +PP  PL P      P P P   +LPP
Sbjct: 226  PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPP 261


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenylation
            specific factor 6, 68 kD subunit variant protein.
          Length = 551

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPP 1490
            P PP     +PP  PL P      P P P   +LPP
Sbjct: 226  PPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPP 261


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,872,546
Number of Sequences: 237096
Number of extensions: 3081035
Number of successful extensions: 11560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11198
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 23129454548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)