Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_B10_e458_04.seq
(1548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.72
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.72
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 31 2.2
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 31 2.2
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 30 3.8
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 30 3.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 5.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 5.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 5.1
Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical pr... 29 8.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.72
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPPXP 1496
P PP +P PP P P T P P P + PP P
Sbjct: 264 PPPPPSVTPMPPPMPPTP-GMTPRPPPPPSSGMWPPPP 300
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.72
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPPXP 1496
P PP +P PP P P T P P P + PP P
Sbjct: 274 PPPPPSVTPMPPPMPPTP-GMTPRPPPPPSSGMWPPPP 310
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Frame = +2
Query: 758 DKRLWIGNXDTRVN-ESLTCYFTRSGPHA----------GQPRGFAFVTLXDETGC 892
DK++++G VN E L+ +FT+ G A G+ RGFAFV GC
Sbjct: 28 DKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGC 83
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Frame = +2
Query: 758 DKRLWIGNXDTRVN-ESLTCYFTRSGPHA----------GQPRGFAFVTLXDETGC 892
DK++++G VN E L+ +FT+ G A G+ RGFAFV GC
Sbjct: 28 DKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGC 83
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 30.3 bits (65), Expect = 3.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +3
Query: 1374 LXXPXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPPXP 1496
L P P P+PP P P P P P PP P
Sbjct: 535 LPSPEPSPVREPTPPPPPREPTPREPTPEPEPVREPTPPPP 575
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed with
polycystins protein4 protein.
Length = 402
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +3
Query: 1389 PPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPP 1490
PP TSPSPP P P PS P LPP
Sbjct: 368 PPIYTSPSPPELPPNP---VEAPSITPFTVGLPP 398
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPP 1490
P PP SP PP P T P P P PP
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPP 1490
P PP SP PP P T P P P PP
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 1383 PXPPXXTSPSPPXXPLXPXXXTXXPSPXPXXXLLPP 1490
P PP SP PP P T P P P PP
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
>Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical
protein F49A5.4 protein.
Length = 308
Score = 29.1 bits (62), Expect = 8.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 450 YLHDIGTNCLNTNCHY 497
Y+H G NCL T CH+
Sbjct: 284 YVHWFGNNCLTTKCHF 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,745,486
Number of Sequences: 27780
Number of extensions: 471137
Number of successful extensions: 1187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4462926140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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