Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B09_e450_03.seq
         (1516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           31   3.2  
06_03_1237 + 28602250-28604196                                         30   4.2  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 368 ITIHWPSFYN-VETGKTLALPNLIALQH 448
           I+  W  F N V++G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>06_03_1237 + 28602250-28604196
          Length = 648

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 17/57 (29%), Positives = 20/57 (35%)
 Frame = +1

Query: 1213 PKVQXXXXXXXRVPWPATXXPFXXVXPQTFXXXXPPPXXPPXGRALXGXFXXXPPXP 1383
            P ++       R+P PAT  PF            PPP   P   AL       PP P
Sbjct: 47   PHLRHLHALAVRLPLPATSLPFLLSRLLRRLAALPPPPHAPLPYALNVFSAVSPPDP 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,854,487
Number of Sequences: 37544
Number of extensions: 436123
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)