Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B09_e450_03.seq
         (1516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X17077-1|CAA34929.1|  202|Caenorhabditis elegans ceh-13 homeodom...    29   8.6  
AC006679-1|AAK84466.1|  202|Caenorhabditis elegans C.elegans hom...    29   8.6  

>X17077-1|CAA34929.1|  202|Caenorhabditis elegans ceh-13 homeodomain
           protein protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = +2

Query: 692 HY*RTWTPXSKGEXPSIRAMAHYVNHHPNXVFWGRGAVXTKSEP*XEPPITA*RXXPXTX 871
           +Y + W P +    PS+ +    +NHHP  ++    +          PP TA    P   
Sbjct: 13  NYYQDW-PTTHSYYPSVPSSYSPLNHHPADIWAAHPSNYIMGNGHVSPPATASGLSPPAS 71

Query: 872 REXKXXSEGP 901
           R     +E P
Sbjct: 72  RSSNSSAELP 81


>AC006679-1|AAK84466.1|  202|Caenorhabditis elegans C.elegans
           homeobox protein 13 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = +2

Query: 692 HY*RTWTPXSKGEXPSIRAMAHYVNHHPNXVFWGRGAVXTKSEP*XEPPITA*RXXPXTX 871
           +Y + W P +    PS+ +    +NHHP  ++    +          PP TA    P   
Sbjct: 13  NYYQDW-PTTHSYYPSVPSSYSPLNHHPADIWAAHPSNYIMGNGHVSPPATASGLSPPAS 71

Query: 872 REXKXXSEGP 901
           R     +E P
Sbjct: 72  RSSNSSAELP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,456,175
Number of Sequences: 27780
Number of extensions: 343005
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)