Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B08_e442_04.seq
         (1297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   2.4  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    26   9.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   9.9  

>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 216 PPP---NFSRAFGTPFSKGFRQGPQPFVQQKV 302
           PPP   NF   FGT F  GFR+G +  + Q++
Sbjct: 117 PPPYSYNFLSMFGTAFLNGFRRG-RKLINQRI 147


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 19/80 (23%), Positives = 28/80 (35%)
 Frame = +3

Query: 54  VEGRDEPXINKSVDHGAHHPESKPTYVXXXXXXQSHSHIDRDQYFADDGPVNFHPPPNFS 233
           +E   E   N   D   ++P S P+ V        H H + D+   +      HP     
Sbjct: 66  LEPPSEHSSNGEDDKDINNPPSMPSSVCSSPKSP-HRHYESDEDIENISLPESHPEDIQR 124

Query: 234 RAFGTPFSKGFRQGPQPFVQ 293
           + F T   K  R  P P  +
Sbjct: 125 KEFETENGKNTRDQPSPLAE 144


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 24/100 (24%), Positives = 43/100 (43%)
 Frame = +1

Query: 103  HIIPSPNPHTYRHRLRRNLILTSTGTNILPTTARLTSIRHLIFLELSVPRLAKASGKVLN 282
            H+ P  + H Y++ LRRN + +         +  L+S + +  LE+ +  L      ++ 
Sbjct: 1475 HVSPDISTHLYKYYLRRNFVSSFIDAFSRAFSELLSSNKDV--LEV-LSGLEAGQCLLIT 1531

Query: 283  LSCNKKFIRRQLTPELLHLREVSLPNLSPHVDEHYVKVPV 402
             + NK  +   LT + + L    L  L       Y+K PV
Sbjct: 1532 FAQNKLTVHSVLTFDYIKLMVQMLLQLCKQGGIQYLKPPV 1571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,618
Number of Sequences: 5004
Number of extensions: 46828
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)