Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B08_e442_04.seq
         (1297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342...    33   0.65 
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396...    32   1.1  
12_01_1102 + 11622839-11623341,11623441-11623750                       30   4.6  

>01_05_0511 -
           22831889-22832523,22833743-22833835,22834018-22834215,
           22834365-22834494,22834596-22834714,22835244-22835487,
           22835607-22835807
          Length = 539

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
 Frame = +1

Query: 67  MSQXSINQSTTAHIIPSPNPH--TYRHRLRRNLILTSTGTNILPTTARLTSIRHLIFLEL 240
           +S  S  Q   + ++P PNP   T R  +     LT   T I     RL ++ H +   +
Sbjct: 10  ISPLSPIQPAPSFLLP-PNPPYATLRSYIPNRPFLTFVPTLIASFPRRLYNLNHWVPFGV 68

Query: 241 SVPRLAKASGKVL--NLSCNKKFIRRQLTPELLHLREVSLPN 360
                   S  VL  + S +KK  RRQ  P    L E+ LPN
Sbjct: 69  CYAMKRAGSKGVLESSFSSSKKTTRRQKKPPTSSLEELELPN 110


>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
            37839747-37839869,37840051-37840208,37840311-37840385,
            37840466-37840506,37840594-37840670,37840755-37840883,
            37840990-37841060,37841237-37841332,37841489-37841584,
            37841681-37841953,37842871-37842957,37843101-37843178,
            37843350-37843514,37843622-37843768,37843921-37843983,
            37844082-37844201,37844352-37844543,37844672-37844748,
            37845094-37845196,37845684-37845887
          Length = 1074

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 198  GPVNFHPPPNFSRAFGTPFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPS 371
            GP  +  PP ++  +G  +      G Q + QQ+  P  +YA  + P  G +P  +P+
Sbjct: 990  GPGRYAQPPPYAGGYGRSYQPAPYGGGQQWQQQQQQPYGSYA-GSGPYGGGAPPARPN 1046


>12_01_1102 + 11622839-11623341,11623441-11623750
          Length = 270

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 265 KPLLNGVPKALEKLGGGWKLTGPSSAKYWSL 173
           K + N + K + K+G GWK   P +  YW++
Sbjct: 143 KQIKNILQKTINKMGTGWKDRLPDALAYWAI 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,551,033
Number of Sequences: 37544
Number of extensions: 379614
Number of successful extensions: 1095
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4038959244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)