Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B08_e442_04.seq
         (1297 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51034| Best HMM Match : Extensin_2 (HMM E-Value=0.038)              31   2.0  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               31   2.0  
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.6  
SB_40476| Best HMM Match : zf-AN1 (HMM E-Value=5.9e-05)                29   8.1  
SB_32611| Best HMM Match : TP2 (HMM E-Value=4.5)                       29   8.1  

>SB_51034| Best HMM Match : Extensin_2 (HMM E-Value=0.038)
          Length = 354

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 54  VEGRDEPXINKSVDHGAHHPESKPTYVXXXXXXQSHSHIDRDQYFADDGPVNFHPPP 224
           + G  EP  ++S++  +    S+PT+        S+ H   D Y+A DG     PPP
Sbjct: 25  INGTSEPTPSQSIERASQQYRSQPTWNGRYPYQPSNYH---DGYYAYDGGYPPPPPP 78


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 279  QPFVQQKVYPQTAYARATSPQRGQS-PKPQPSC*RTLRKSASASRTFDTQG*SSXPRXPX 455
            QP    K   +   AR  +  +  S PKPQP+  +T+ K+     T + QG  S P  P 
Sbjct: 2293 QPSEPGKGKQKAGLAREDATFKSSSQPKPQPTAQQTILKNTKPRETLNRQG--SNPVRPD 2350

Query: 456  NXPXT 470
            + P T
Sbjct: 2351 SLPVT 2355


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 266 QARSSTFRATKSL-SADSLRPSYFTSERSVSQTSALMLTNIT*KCQCITNIRHP 424
           QA S   ++++SL ++     S  T++ +VS +S+ +LT++     C+T + HP
Sbjct: 763 QASSLKGQSSESLKTSHGTETSTVTTQSAVSTSSSGVLTSVVSTANCVTAVGHP 816


>SB_40476| Best HMM Match : zf-AN1 (HMM E-Value=5.9e-05)
          Length = 363

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = +3

Query: 201 PVNFHPPPNFSRAFGTPFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPSC*R 380
           P+  HPP +   A G       +  P P V  K   Q   +   + Q  Q PKP PS  R
Sbjct: 93  PLLPHPPSSSIEASGMRGGSDSKSKPLPPVNTKKGKQIDVSDFLAHQ--QEPKPVPSMSR 150

Query: 381 TLRKSA 398
            L +SA
Sbjct: 151 ALTRSA 156


>SB_32611| Best HMM Match : TP2 (HMM E-Value=4.5)
          Length = 285

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = +3

Query: 201 PVNFHPPPNFSRAFGTPFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPSC*R 380
           P+  HPP +   A G       +  P P V  K   Q   +   + Q  Q PKP PS  R
Sbjct: 93  PLLPHPPSSSIEASGMRGGSDSKSKPLPPVNTKKGKQIDVSDFLAHQ--QEPKPVPSMSR 150

Query: 381 TLRKSA 398
            L +SA
Sbjct: 151 ALTRSA 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,079,138
Number of Sequences: 59808
Number of extensions: 401529
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4093761995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)