Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B08_e442_04.seq
         (1297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42437-5|AAA83499.1|  302|Caenorhabditis elegans Dumpy : shorter...    30   4.1  
M23559-1|AAA27994.1|  302|Caenorhabditis elegans protein ( C.ele...    30   4.1  
Z29443-10|CAA82578.2|  315|Caenorhabditis elegans Hypothetical p...    29   9.5  
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    29   9.5  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     29   9.5  
AB121091-1|BAD14918.1|  315|Caenorhabditis elegans T-box transcr...    29   9.5  

>U42437-5|AAA83499.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 13 protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 547 PNNXXGTPGXXXEXXXPTXKGPPKPXXISGXXGNP 651
           P    G PG       P  KGPP P    G  GNP
Sbjct: 232 PPGPSGQPGNDGTPGQPGPKGPPGPDGKPGADGNP 266


>M23559-1|AAA27994.1|  302|Caenorhabditis elegans protein (
           C.elegans collagen (dpy-13) gene, complete cds. ).
          Length = 302

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 547 PNNXXGTPGXXXEXXXPTXKGPPKPXXISGXXGNP 651
           P    G PG       P  KGPP P    G  GNP
Sbjct: 232 PPGPSGQPGNDGTPGQPGPKGPPGPDGKPGADGNP 266


>Z29443-10|CAA82578.2|  315|Caenorhabditis elegans Hypothetical
           protein T07C4.2 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 249 PFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPSC*RTLRKS 395
           PF+KGFR+G Q    +K    +A    T     Q   PQP   RT+  S
Sbjct: 188 PFAKGFREGSQS--DRKRNSPSADDSTTDESSSQVSSPQPKKSRTVSVS 234


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein
           14 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 547 PNNXXGTPGXXXEXXXPTXKGPPKPXXISGXXGNP 651
           P+   G PG   E   P  +GP  P  I G  G P
Sbjct: 217 PDGPPGAPGNAGEDGKPGDQGPRGPPGIPGAPGQP 251


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 547 PNNXXGTPGXXXEXXXPTXKGPPKPXXISGXXGNP 651
           P+   G PG   E   P  +GP  P  I G  G P
Sbjct: 198 PDGPPGAPGNAGEDGKPGDQGPRGPPGIPGAPGQP 232


>AB121091-1|BAD14918.1|  315|Caenorhabditis elegans T-box
           transcription factor TBX-8 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 249 PFSKGFRQGPQPFVQQKVYPQTAYARATSPQRGQSPKPQPSC*RTLRKS 395
           PF+KGFR+G Q    +K    +A    T     Q   PQP   RT+  S
Sbjct: 188 PFAKGFREGSQS--DRKRNSPSADDSTTDESSSQVSSPQPKKSRTVSVS 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,759,723
Number of Sequences: 27780
Number of extensions: 320558
Number of successful extensions: 1295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3611117266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)