Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B08_e442_04.seq
         (1297 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    29   6.7  
At3g09380.1 68416.m01113 hypothetical protein contains Pfam prof...    29   6.7  
At2g41750.1 68415.m05161 DTW domain-containing protein contains ...    29   8.8  

>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = +3

Query: 153 QSHSHIDRDQYFADDGPVNFHPPPNFSRA-FGTP-----FSKGFRQGPQPFVQQKVYPQT 314
           QS S   +D+ +  +   +  PP N SR   G+P      S+  R+   P   +   P+ 
Sbjct: 173 QSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSPRKNRSYTPEQ 232

Query: 315 AYARATSPQRGQSPKPQP 368
           A +++  P++ +SP P P
Sbjct: 233 ARSQSPVPRQSRSPTPVP 250


>At3g09380.1 68416.m01113 hypothetical protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 156

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = +1

Query: 106 IIPSPNPHTYRHRLRRNLILTSTGTNILPTTARLTSIRHLIFLELSVPRLAKASGKVLNL 285
           ++ + NP  Y  R RR     S+ T+   +T R+  I+     ELS+  L   + + + +
Sbjct: 11  VLTNKNPIIYPKRTRRYRTDQSS-TDEFSSTNRIRDIKDPEHPELSLEDLNVLTEESVEV 69

Query: 286 SCNKKFIRRQLTPELLH 336
             +K ++R   TP L H
Sbjct: 70  DDHKSYVRITFTPTLPH 86


>At2g41750.1 68415.m05161 DTW domain-containing protein contains
           Pfam domain, PF03942: DTW domain
          Length = 253

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 94  TTAHIIPSPNPHTYRHRLRRNLILTSTGTNILPTTARLTSIRHL 225
           T   II   +PH  RH+L    +LT +  N+    AR    RH+
Sbjct: 36  TNTEIIILHHPHESRHKLNTTPLLTKSLLNVTRIPARRLLRRHI 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,763,340
Number of Sequences: 28952
Number of extensions: 276804
Number of successful extensions: 719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3364305312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)