Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B07_e434_03.seq
         (1548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.3  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   7.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 21/79 (26%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
 Frame = +3

Query: 1272 PXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPPAXXRXXXXXMXXXAXXAA 1451
            P +P PP     LRP P          PP    APP     P             A   +
Sbjct: 125  PSAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183

Query: 1452 XGRRPG-PXXAPXPPPXXP 1505
                P  P   P  PP  P
Sbjct: 184  PPSAPSLPSAVPPMPPKVP 202


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 176 HYSEKFQNEIL*QSRAIYIFYCFLYVQNNYI 268
           HY+E+F + ++   RAI +F   LY+   Y+
Sbjct: 356 HYNERFFHYLIDTDRAIDLFIFLLYLSFEYL 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,580,666
Number of Sequences: 5004
Number of extensions: 61502
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 870174386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)