Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_B07_e434_03.seq
(1548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 38 0.016
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.022
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.038
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 35 0.20
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 35 0.20
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 34 0.35
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 33 0.61
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 33 0.61
SB_16908| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 32 1.4
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 31 1.9
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 31 1.9
SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 31 2.5
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.3
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 7.6
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.7
SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 10.0
SB_18636| Best HMM Match : GPS (HMM E-Value=8.4) 29 10.0
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 38.3 bits (85), Expect = 0.016
Identities = 27/94 (28%), Positives = 29/94 (30%)
Frame = +3
Query: 1224 PXXPXLXXVXPSPPXXPXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPPAX 1403
P P PSPP P SP R P P PP +AP PP
Sbjct: 114 PRAPETPSQAPSPPPPPTSPA-----TRAPPPPPPIAPATGGPPPPPPIAPATGGPPPPP 168
Query: 1404 XRXXXXXMXXXAXXAAXGRRPGPXXAPXPPPXXP 1505
+ A A P P P PPP P
Sbjct: 169 PIAPAATVPAPAVPLAAASPPPPSGGPPPPPPPP 202
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 37.9 bits (84), Expect = 0.022
Identities = 30/110 (27%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Frame = -3
Query: 1543 GAXGEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXX---MXXXXXRXXAGGXXVXGG 1373
G G A G GGG GA G G A GG GG
Sbjct: 239 GRLGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGG 298
Query: 1372 ASRXXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXG 1223
GG G GGG G G GG G T G G
Sbjct: 299 GGGATGGGGGATGVGGGATGGGGGATGGGVGATG--GGGGATGGGGGVTG 346
Score = 35.9 bits (79), Expect = 0.087
Identities = 29/106 (27%), Positives = 30/106 (28%), Gaps = 2/106 (1%)
Frame = -3
Query: 1534 GEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXG 1355
G A G GGG GA G G A GG GG + G
Sbjct: 256 GGGGATGGGGGATGGGGGATGGGGGATGGGGGATGG--GGGATGGGGGATGGGGGATGVG 313
Query: 1354 GXXXXXRSX*XGXGRXRXXXGGGX--GEXGXXGGXGXTXXXXGXXG 1223
G G G GGG G G GG G G G
Sbjct: 314 GGATGGGGGATGGGVGATGGGGGATGGGGGVTGGGGGATGGGGGPG 359
Score = 31.5 bits (68), Expect = 1.9
Identities = 23/93 (24%), Positives = 23/93 (24%)
Frame = -3
Query: 1396 GGXXVXGGASRXXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRA 1217
GG GG GG G GGG G G GG G T G G
Sbjct: 242 GGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATG--GGGGATGGGGGATGGG 299
Query: 1216 XRXERRXXXXXXXRVXXXXXGXGXXGPXXGGXG 1118
G G G G G
Sbjct: 300 GGATGGGGGATGVGGGATGGGGGATGGGVGATG 332
Score = 29.5 bits (63), Expect = 7.6
Identities = 23/88 (26%), Positives = 23/88 (26%)
Frame = -3
Query: 1534 GEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXG 1355
G A G GGG GA G G A GG GG G
Sbjct: 284 GGGGATGGGGGATGGGGGATGGGG----GATGVGGGATGGGGGATGGGVGATGGGGGATG 339
Query: 1354 GXXXXXRSX*XGXGRXRXXXGGGXGEXG 1271
G G GG GE G
Sbjct: 340 GGGGVTGGGGGATGGGGGPGSGGCGEDG 367
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 37.1 bits (82), Expect = 0.038
Identities = 24/84 (28%), Positives = 25/84 (29%)
Frame = -3
Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX* 1325
G GGG G G G M GG + GG GG
Sbjct: 1759 GGGGGGGGMGGGGGMAGGGGGMGGGGMAAGGGEF-GGGEGMGGGGMAGGGGGMGGGGGGM 1817
Query: 1324 XGXGRXRXXXGGGXGEXGXXGGXG 1253
G G GGG G G GG G
Sbjct: 1818 GGGGEGMGAAGGGMGAGGEGGGAG 1841
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +2
Query: 1253 PXPXXXPPLXPPPSXXXPXSAXPXLXAPAXXPXAXXXXTXPAXD 1384
P P PP PPPS P SA P A A P A P D
Sbjct: 553 PTPVTAPPPAPPPSVFAPSSAVPT-PATAPPPVAATLSAPPPLD 595
Score = 31.9 bits (69), Expect = 1.4
Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +2
Query: 1148 PPAXLXXGXPVXXXXXXXPLXPXRTXXXSXXXXCXPXPXXXPPLXPPPSXXXPXSAXPX- 1324
PP+ V P P + P P PP PPPS P S P
Sbjct: 498 PPSVFAPSSGVPTTVTAPPAAPPPSVFAPSSGV--PTPVTEPPPAPPPSVFAPSSGVPTP 555
Query: 1325 LXAPAXXP 1348
+ AP P
Sbjct: 556 VTAPPPAP 563
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +2
Query: 1253 PXPXXXPPLXPPPSXXXPXSAXPX-LXAP 1336
P P PP PPPS P S P + AP
Sbjct: 393 PTPVAAPPPAPPPSVFAPSSGVPTPVAAP 421
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +2
Query: 1253 PXPXXXPPLXPPPSXXXPXSAXPX-LXAP 1336
P P PP PPPS P S P + AP
Sbjct: 451 PTPVTAPPPAPPPSVFAPSSGVPTPVAAP 479
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 34.7 bits (76), Expect = 0.20
Identities = 29/95 (30%), Positives = 31/95 (32%)
Frame = +3
Query: 1212 RXARPXXPXLXXVXPSPPXXPXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXX 1391
R A P P P PP +P PPP P P R PP R APP
Sbjct: 293 RGAAPPPPS-RGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPP---- 347
Query: 1392 PPAXXRXXXXXMXXXAXXAAXGRRPGPXXAPXPPP 1496
PP+ A P P P PPP
Sbjct: 348 PPS----MGMAPPPVGGAAPPPPPPPPVGGPPPPP 378
Score = 29.1 bits (62), Expect = 10.0
Identities = 27/97 (27%), Positives = 28/97 (28%)
Frame = +3
Query: 1107 GVXSPXPPXXGPXXPXPXXXXXTRXXXXXXXRLSXRXARPXXPXLXXVXPSPPXXPXSPX 1286
G+ P PP G P P S A P P P PP S
Sbjct: 284 GIQPPPPPSRGAAPPPPSRGAPPPPP-------SRGSAPPPPPARMGTAPPPPPPSRSSQ 336
Query: 1287 PPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPP 1397
PP R P P PP APP PP
Sbjct: 337 RPPPPSRGAPPPP---SMGMAPPPVGGAAPPPPPPPP 370
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 33.9 bits (74), Expect = 0.35
Identities = 32/111 (28%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Frame = -3
Query: 1543 GAXGEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXV--XGGA 1370
GA G A G GGG GA G G A GG GGA
Sbjct: 55 GATG-GGATGGGGGATGGGGGATGGHG---GATGGGGGATGDGGGATGGGGGATGGGGGA 110
Query: 1369 SRXXGGXXXXXRSX*XGXGRXRXXXGGGXGEXG--XXGGXGXTXXXXGXXG 1223
+ GG G G GG G G GG G T G G
Sbjct: 111 TGGHGGATGGGVGATGGHGGATGGHGGATGGHGGATGGGGGATGGGGGATG 161
Score = 33.1 bits (72), Expect = 0.61
Identities = 24/96 (25%), Positives = 26/96 (27%)
Frame = -3
Query: 1396 GGXXVXGGASRXXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRA 1217
GG GGA+ GG G G GG G+ G G G G G A
Sbjct: 53 GGGATGGGATGGGGGATGGGGGATGGHGGATGGGGGATGDGG--GATGGGGGATGGGGGA 110
Query: 1216 XRXERRXXXXXXXRVXXXXXGXGXXGPXXGGXGXXT 1109
G G GG G T
Sbjct: 111 TGGHGGATGGGVGATGGHGGATGGHGGATGGHGGAT 146
Score = 33.1 bits (72), Expect = 0.61
Identities = 24/92 (26%), Positives = 24/92 (26%)
Frame = -3
Query: 1534 GEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXG 1355
G A G G G GA G G A GG GG G
Sbjct: 78 GHGGATGGGGGATGDGGGATGGGG----GATGGGGGATGGHGGATGGGVGATGGHGGATG 133
Query: 1354 GXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGG 1259
G G GGG G G GG
Sbjct: 134 GHGGATGGHGGATGGGGGATGGGGGATGGGGG 165
Score = 31.5 bits (68), Expect = 1.9
Identities = 26/109 (23%), Positives = 27/109 (24%), Gaps = 2/109 (1%)
Frame = -3
Query: 1543 GAXGEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASR 1364
GA G G GG G G G G GGA+
Sbjct: 60 GATGGGGGATGGGGGATGGHGGATGGGGGATGDGGGATGGGGGATGGGGGATGGHGGATG 119
Query: 1363 XXGGXXXXXRSX*XGXGRXRXXXGGGXGEXG--XXGGXGXTXXXXGXXG 1223
G G G GG G G GG G T G G
Sbjct: 120 GGVGATGGHGGATGGHGGATGGHGGATGGGGGATGGGGGATGGGGGATG 168
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 33.1 bits (72), Expect = 0.61
Identities = 28/91 (30%), Positives = 30/91 (32%)
Frame = +3
Query: 1224 PXXPXLXXVXPSPPXXPXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPPAX 1403
P P PP +P PPP P P LR PP PP + PP
Sbjct: 299 PLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPP-----PPIS-KPPTS 352
Query: 1404 XRXXXXXMXXXAXXAAXGRRPGPXXAPXPPP 1496
R A GR P P P PPP
Sbjct: 353 TR--------SAPPPPPGRAPQPLGGPPPPP 375
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 33.1 bits (72), Expect = 0.61
Identities = 28/91 (30%), Positives = 30/91 (32%)
Frame = +3
Query: 1224 PXXPXLXXVXPSPPXXPXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPPAX 1403
P P PP +P PPP P P LR PP PP + PP
Sbjct: 211 PLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPP-----PPIS-KPPTS 264
Query: 1404 XRXXXXXMXXXAXXAAXGRRPGPXXAPXPPP 1496
R A GR P P P PPP
Sbjct: 265 TR--------SAPPPPPGRAPQPLGGPPPPP 287
>SB_16908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 32.3 bits (70), Expect = 1.1
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -1
Query: 1395 GGXXSXAGXVXXXXAXGXXAGAXXXGXAEXGXXXEGGGXXGGXXXGXG 1252
GG + G A G A A G A+ G +GGG GG G G
Sbjct: 143 GGANTNGGGADNVAATGGGAVAGV-GTADDGANTDGGGAGGGAVTGVG 189
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 32.3 bits (70), Expect = 1.1
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -3
Query: 1408 RXXAGGXXVXGGASRXXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGG 1259
R GG GG R GG G GR GGG G G GG
Sbjct: 88 RGERGGGGSQGGGYRSGGGGYGGSSRGGYGGGRGGGGYGGGRGGGGSYGG 137
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 31.9 bits (69), Expect = 1.4
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -3
Query: 1408 RXXAGGXXVXGGASRXXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGG 1259
R GG GG R GG G GR GGG G G GG
Sbjct: 179 RNERGGGGSQGGGYRSGGGGYGGSSRGGYGGGRGGGGYGGGRGGGGGYGG 228
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 31.5 bits (68), Expect = 1.9
Identities = 24/91 (26%), Positives = 24/91 (26%)
Frame = -3
Query: 1495 GGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX*XGX 1316
GGG G G G GG GG GG G
Sbjct: 781 GGGDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGGDGGGYGDGGGFGDGG 840
Query: 1315 GRXRXXXGGGXGEXGXXGGXGXTXXXXGXXG 1223
G GGG G G GG G G G
Sbjct: 841 GYADGDGGGGGGGGGGGGGGGGGGGGGGGGG 871
Score = 29.5 bits (63), Expect = 7.6
Identities = 23/84 (27%), Positives = 23/84 (27%)
Frame = -3
Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX* 1325
G GGG G G G GG GG GG
Sbjct: 791 GGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGGDGGGYGDGGGFGDGGGYADGDGGGG 850
Query: 1324 XGXGRXRXXXGGGXGEXGXXGGXG 1253
G G GGG G G GG G
Sbjct: 851 GGGGGGGGGGGGGGGGGGGGGGGG 874
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 31.5 bits (68), Expect = 1.9
Identities = 24/97 (24%), Positives = 27/97 (27%), Gaps = 2/97 (2%)
Frame = +3
Query: 1221 RPXXPXLXXVXPSPPXXPXSPXPP-PXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPP 1397
+P P P+PP P P PP P P P L P L P PP
Sbjct: 175 KPPKPPAPSTIPTPPTPPAPPSPPIPTAPPTPPMPETPLPPGSPHIPPAPLHPHIPPAPP 234
Query: 1398 AXXRXXXXXMXXXAXXAAXGRRPGPXXAPXPP-PXXP 1505
+ P P P P P P
Sbjct: 235 NPSKAIATPNPPMPETPLPPATPNPFIPPASPNPSIP 271
>SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 31.1 bits (67), Expect = 2.5
Identities = 18/99 (18%), Positives = 22/99 (22%)
Frame = -1
Query: 1434 PXXXAXXXXXXPXGGXXSXAGXVXXXXAXGXXAGAXXXGXAEXGXXXEGGGXXGGXXXGX 1255
P GG + G + G GA + G GGG G
Sbjct: 146 PKTVGGTSSGTSTGGLTTATGGSTGAPSSGAMVGATTWSASSAGASAGGGGGVGTTGGST 205
Query: 1254 GXXXXXXEXXXVRXGXRGXXXHXXXTGXPXXRXAGGXXG 1138
G G G T +G G
Sbjct: 206 GAAGGGGGGTSTSTGSSGSTGTSMVTSGGGISTSGSSSG 244
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 31.1 bits (67), Expect = 2.5
Identities = 18/52 (34%), Positives = 20/52 (38%)
Frame = -3
Query: 1408 RXXAGGXXVXGGASRXXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXG 1253
R +GG GG R GG + G G GGG G G GG G
Sbjct: 175 RGDSGGGGSQGGGYRSGGGGYGGSKGG-YGGGSGGGGYGGGRGGGGYGGGHG 225
>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 30.7 bits (66), Expect = 3.3
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -1
Query: 1401 PXGGXXSXAGXVXXXXAXGXXAGAXXXGXAEXGXXXEGGGXXGGXXXGXG 1252
P GG S G A G AGA G G GG G G G
Sbjct: 403 PSGGSSSGTGA---SSAGGSSAGASGGGHKGAGGGSAAGGGTGSGSTGNG 449
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +3
Query: 1254 PSPPXXPXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAP 1376
PSPP P P PPP + P P ++ P + P
Sbjct: 199 PSPPSKPFKPSPPPKPS-IAPKPSLAIKPAISPKPTLKPKP 238
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.5 bits (63), Expect = 7.6
Identities = 27/103 (26%), Positives = 29/103 (28%)
Frame = +3
Query: 1089 GXALVXGVXSPXPPXXGPXXPXPXXXXXTRXXXXXXXRLSXRXARPXXPXLXXVXPSPPX 1268
G AL + + PP P S P P P PP
Sbjct: 160 GDALRQSIGTTFPPTRLPGNARVNAIDQISIGTSHPTSPSQITQPPPPPPRPPPSPPPPP 219
Query: 1269 XPXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPP 1397
P SP PP P P L PP PP T PP
Sbjct: 220 PPPSPSPPRPPPPPPPSPPRPLAAKLPEPPPIPNMPP-TLPPP 261
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 25.0 bits (52), Expect(2) = 8.7
Identities = 15/60 (25%), Positives = 18/60 (30%)
Frame = +3
Query: 1218 ARPXXPXLXXVXPSPPXXPXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPP 1397
A P + P PP P +P P P P PP P + PP
Sbjct: 150 ASSSGPSIASQPPQPPAPPAAPFMAPAAPPAPPPP-----GAPAAPPAPPFGGPPSAPPP 204
Score = 22.6 bits (46), Expect(2) = 8.7
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 1467 GPXXAPXPPPXXP 1505
GP AP PPP P
Sbjct: 197 GPPSAPPPPPAPP 209
>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.1 bits (62), Expect = 10.0
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = -3
Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX* 1325
G GGG G G G A GG G GG +
Sbjct: 33 GVGGGGVGGGGGNGGGAGNGVGAGGCGCGGGNDGGNGGGGAGNGGG--GGGAGNGGAAGA 90
Query: 1324 XGXGRXRXXXGGGXGEXGXXGGXG 1253
G G GGG G G GG G
Sbjct: 91 AGAGAGGNVGGGGSGGVGGNGGSG 114
>SB_18636| Best HMM Match : GPS (HMM E-Value=8.4)
Length = 513
Score = 29.1 bits (62), Expect = 10.0
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 340 SPCKQNKRQFITFLNLNLY--CTSKFNIIVLNVQK 242
SP K + +TF++ N+Y SKF + +N++K
Sbjct: 25 SPIKSTRGDLLTFIHANIYLVLASKFKQVTVNIKK 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,730,419
Number of Sequences: 59808
Number of extensions: 480738
Number of successful extensions: 3395
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2941
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5047244110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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