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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B07_e434_03.seq
         (1548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical...    34   0.31 
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    33   0.41 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   2.2  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   2.2  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    31   2.9  
AF003140-8|AAB54169.1|  396|Caenorhabditis elegans Hypothetical ...    31   2.9  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    30   3.8  
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    29   6.7  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   8.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   8.8  
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    29   8.8  
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    29   8.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   8.8  

>AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical
            protein Y25C1A.3 protein.
          Length = 605

 Score = 33.9 bits (74), Expect = 0.31
 Identities = 30/204 (14%), Positives = 33/204 (16%)
 Frame = -3

Query: 1543 GAXGEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASR 1364
            G+     A         GG  A    G                     A        AS 
Sbjct: 86   GSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTATTAAGGSTAST 145

Query: 1363 XXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRAXRXERRXXXXX 1184
              GG      +     G       GG       GG   T    G                
Sbjct: 146  AAGGSTASTAAG----GSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTATTAA 201

Query: 1183 XXRVXXXXXGXGXXGPXXGGXGXXTPXTRAXPXXPQXAXXXXXRGXXXGAXTXEGXSVXX 1004
                     G        GG    T    +                   A T  G S   
Sbjct: 202  GGSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTAT 261

Query: 1003 XXXGGXXRAXXXXXPPXGXXXXGS 932
               GG                 GS
Sbjct: 262  TAAGGSTATTAAGGSTASTAAGGS 285



 Score = 32.7 bits (71), Expect = 0.72
 Identities = 30/204 (14%), Positives = 33/204 (16%)
 Frame = -3

Query: 1543 GAXGEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASR 1364
            G+     A         GG  A    G                     A        AS 
Sbjct: 104  GSTATTAAGGSTATTAAGGSTASTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTAST 163

Query: 1363 XXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRAXRXERRXXXXX 1184
              GG      +     G       GG       GG   T    G                
Sbjct: 164  AAGGSTATTAAG----GSTATTAAGGSTASTAAGGSTATTAAGGSTASTAAGGSTASTAA 219

Query: 1183 XXRVXXXXXGXGXXGPXXGGXGXXTPXTRAXPXXPQXAXXXXXRGXXXGAXTXEGXSVXX 1004
                     G        GG    T    +                   A T  G S   
Sbjct: 220  GGSTATTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTAS 279

Query: 1003 XXXGGXXRAXXXXXPPXGXXXXGS 932
               GG                 GS
Sbjct: 280  TAAGGSTATTAAGGSTASTAAGGS 303



 Score = 32.7 bits (71), Expect = 0.72
 Identities = 29/204 (14%), Positives = 33/204 (16%)
 Frame = -3

Query: 1543 GAXGEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASR 1364
            G+     A         GG  A    G                     A        A+ 
Sbjct: 140  GSTASTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTATT 199

Query: 1363 XXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRAXRXERRXXXXX 1184
              GG      +     G       GG       GG   T    G                
Sbjct: 200  AAGGSTASTAAG----GSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTASTAA 255

Query: 1183 XXRVXXXXXGXGXXGPXXGGXGXXTPXTRAXPXXPQXAXXXXXRGXXXGAXTXEGXSVXX 1004
                     G        GG    T    +                   A T  G S   
Sbjct: 256  GGSTATTAAGGSTATTAAGGSTASTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTAT 315

Query: 1003 XXXGGXXRAXXXXXPPXGXXXXGS 932
               GG                 GS
Sbjct: 316  TAAGGSTATTAAGGSTASTAAGGS 339



 Score = 32.7 bits (71), Expect = 0.72
 Identities = 29/204 (14%), Positives = 34/204 (16%)
 Frame = -3

Query: 1543 GAXGEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASR 1364
            G+     A         GG  A    G                     A        AS 
Sbjct: 149  GSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTATTAAGGSTAST 208

Query: 1363 XXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRAXRXERRXXXXX 1184
              GG      +     G       GG       GG   +    G                
Sbjct: 209  AAGGSTASTAAG----GSTATTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATTAA 264

Query: 1183 XXRVXXXXXGXGXXGPXXGGXGXXTPXTRAXPXXPQXAXXXXXRGXXXGAXTXEGXSVXX 1004
                     G        GG    T    +                   A T  G S   
Sbjct: 265  GGSTATTAAGGSTASTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTAT 324

Query: 1003 XXXGGXXRAXXXXXPPXGXXXXGS 932
               GG   +             GS
Sbjct: 325  TAAGGSTASTAAGGSTASTAAGGS 348



 Score = 32.3 bits (70), Expect = 0.95
 Identities = 30/216 (13%), Positives = 36/216 (16%)
 Frame = -3

Query: 1543 GAXGEXXAXXXXXGXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASR 1364
            G+     A         GG  A    G    +                A        AS 
Sbjct: 158  GSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTATTAAGGSTASTAAGGSTAST 217

Query: 1363 XXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRAXRXERRXXXXX 1184
              GG      +     G       GG       GG   +    G                
Sbjct: 218  AAGGSTATTAAG----GSTATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTATTAA 273

Query: 1183 XXRVXXXXXGXGXXGPXXGGXGXXTPXTRAXPXXPQXAXXXXXRGXXXGAXTXEGXSVXX 1004
                     G        GG    T    +                   A T  G S   
Sbjct: 274  GGSTASTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTAS 333

Query: 1003 XXXGGXXRAXXXXXPPXGXXXXGSVXXAXPXXXPXP 896
               GG   +             GS           P
Sbjct: 334  TAAGGSTASTAAGGSTATTAAGGSTASTGVTVASSP 369



 Score = 29.5 bits (63), Expect = 6.7
 Identities = 29/191 (15%), Positives = 32/191 (16%)
 Frame = -3

Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX* 1325
            G       A             A            AGG  V    S   GG      +  
Sbjct: 40   GSTTASTAAGGSTSTTAAGGSTASTAAGGSTSTTAAGGSTV----STAAGGSTASTAAG- 94

Query: 1324 XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRAXRXERRXXXXXXXRVXXXXXGXGX 1145
               G       GG       GG   T    G                         G   
Sbjct: 95   ---GSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTATTAAGGSTASTAAGGST 151

Query: 1144 XGPXXGGXGXXTPXTRAXPXXPQXAXXXXXRGXXXGAXTXEGXSVXXXXXGGXXRAXXXX 965
                 GG    T    +                   A T  G S      GG   +    
Sbjct: 152  ASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTATTAAGGSTASTAAG 211

Query: 964  XPPXGXXXXGS 932
                     GS
Sbjct: 212  GSTASTAAGGS 222


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical protein
            T10B10.1 protein.
          Length = 428

 Score = 33.5 bits (73), Expect = 0.41
 Identities = 28/99 (28%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
 Frame = +3

Query: 1257 SPPXXPXS-PXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPPAXXRXXXXXMXX 1433
            +PP    S P PPP      P            PP  R APP T  PPA  R        
Sbjct: 284  TPPSSGTSAPQPPPRGSTAAPG--------TRAPPATR-APPATRAPPATTRAPPATTRP 334

Query: 1434 XAXXAAXGRRPGPXXA--PXPPPXXPXXXXXAXXSPXAP 1544
                    R P    +  P P P  P     +  SP  P
Sbjct: 335  APASQPPVREPETPDSGYPSPAPQEPAHPSPSYPSPSYP 373


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical protein
            ZK643.8 protein.
          Length = 774

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 30/129 (23%), Positives = 31/129 (24%)
 Frame = -3

Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX* 1325
            G  GGG G   G G        +             GG    GG     GG      S  
Sbjct: 153  GGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGC---GGGGSSGGGGYAVAPSGG 209

Query: 1324 XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRAXRXERRXXXXXXXRVXXXXXGXGX 1145
             G G      GGG       GG   T    G  G A                      G 
Sbjct: 210  GGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYSSGGSSGGGYSTGGG 269

Query: 1144 XGPXXGGXG 1118
             G   GG G
Sbjct: 270  GGYAGGGGG 278



 Score = 30.7 bits (66), Expect = 2.9
 Identities = 27/96 (28%), Positives = 27/96 (28%)
 Frame = -3

Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX* 1325
            G  GGG G   G G                      GG    GG     GG      S  
Sbjct: 91   GGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGS----SGG 146

Query: 1324 XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRA 1217
             G G      GGG G  G  GG G      G  G A
Sbjct: 147  CGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYA 182



 Score = 29.5 bits (63), Expect = 6.7
 Identities = 23/97 (23%), Positives = 25/97 (25%), Gaps = 3/97 (3%)
 Frame = -3

Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASR---XXGGXXXXXR 1334
            G  GGG  A    G        +             GG    GG        GG      
Sbjct: 195  GSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGY 254

Query: 1333 SX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXG 1223
            S     G      GGG    G  GG G +    G  G
Sbjct: 255  SSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSG 291


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical protein
            ZK643.8 protein.
          Length = 774

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 30/129 (23%), Positives = 31/129 (24%)
 Frame = -3

Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX* 1325
            G  GGG G   G G        +             GG    GG     GG      S  
Sbjct: 153  GGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGC---GGGGSSGGGGYAVAPSGG 209

Query: 1324 XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRAXRXERRXXXXXXXRVXXXXXGXGX 1145
             G G      GGG       GG   T    G  G A                      G 
Sbjct: 210  GGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYSSGGSSGGGYSTGGG 269

Query: 1144 XGPXXGGXG 1118
             G   GG G
Sbjct: 270  GGYAGGGGG 278



 Score = 30.7 bits (66), Expect = 2.9
 Identities = 27/96 (28%), Positives = 27/96 (28%)
 Frame = -3

Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX* 1325
            G  GGG G   G G                      GG    GG     GG      S  
Sbjct: 91   GGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGS----SGG 146

Query: 1324 XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRA 1217
             G G      GGG G  G  GG G      G  G A
Sbjct: 147  CGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYA 182



 Score = 29.5 bits (63), Expect = 6.7
 Identities = 23/97 (23%), Positives = 25/97 (25%), Gaps = 3/97 (3%)
 Frame = -3

Query: 1504 GXXGGGXGAXXGPGRRPXAAXXAXXXMXXXXXRXXAGGXXVXGGASR---XXGGXXXXXR 1334
            G  GGG  A    G        +             GG    GG        GG      
Sbjct: 195  GSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGY 254

Query: 1333 SX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXGXXG 1223
            S     G      GGG    G  GG G +    G  G
Sbjct: 255  SSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSG 291


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical protein
            C27H5.3 protein.
          Length = 448

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 19/69 (27%), Positives = 22/69 (31%)
 Frame = -3

Query: 1459 RPXAAXXAXXXMXXXXXRXXAGGXXVXGGASRXXGGXXXXXRSX*XGXGRXRXXXGGGXG 1280
            +P     +   +     R  AGG     G     GG          G G  R   GGG G
Sbjct: 271  QPFPGGSSPMSISLAKFRADAGGERGGRGGRGGFGGGRGGPMGGRGGFGGDRGGYGGGGG 330

Query: 1279 EXGXXGGXG 1253
              G  GG G
Sbjct: 331  RGGFDGGRG 339


>AF003140-8|AAB54169.1|  396|Caenorhabditis elegans Hypothetical
            protein C44E4.4 protein.
          Length = 396

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -3

Query: 1312 RXRXXXGGGXGEXGXXGGXGXTXXXXGXXGRAXRXERR 1199
            R     GGG G  G  GG G      G  GR  R +RR
Sbjct: 323  RKNQRQGGGRGGRGGRGGRGGRGGRGGRGGRGGRGDRR 360


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical protein
            Y49E10.10 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 21/78 (26%), Positives = 24/78 (30%)
 Frame = +3

Query: 1272 PXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXTXXPPAXXRXXXXXMXXXAXXAA 1451
            P +  PPP   +  P P          PP    APP    PP                 A
Sbjct: 170  PTTEAPPPPTTKAPPPPT-----TKAPPPPTTKAPP----PPTTKAPPPPTTNKEVTTVA 220

Query: 1452 XGRRPGPXXAPXPPPXXP 1505
               +P P  AP P P  P
Sbjct: 221  PVPKPAPVTAPAPNPPAP 238



 Score = 29.1 bits (62), Expect = 8.8
 Identities = 29/129 (22%), Positives = 32/129 (24%), Gaps = 2/129 (1%)
 Frame = +3

Query: 1116 SPXPPXXGPXXPXPXXXXXTRXXXXXXXRLSXRXARPXXPXLXXVXPSPPXXPXSPXPPP 1295
            S   P   P  P P     T                P  P       +PP  P +  PPP
Sbjct: 147  STVKPATAPVTPEPTVKNTTAAEPTTEAPPPPTTKAPPPPT----TKAPPP-PTTKAPPP 201

Query: 1296 XXXRLRPXPXYXLRXXXXXP-PXXRLAPPXTXXPPAXXRXXXXXMXXXAXXAAX-GRRPG 1469
               +  P P          P P           PPA               AA     P 
Sbjct: 202  PTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPAPENTTAKVETTKPTKAAPPAPTPV 261

Query: 1470 PXXAPXPPP 1496
            P   P PPP
Sbjct: 262  PNPVPSPPP 270


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
            protein F47B8.13 protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 23/94 (24%), Positives = 25/94 (26%), Gaps = 1/94 (1%)
 Frame = +3

Query: 1218 ARPXXPXLXXVXPSPPXXPXSPXPPPXXX-RLRPXPXYXLRXXXXXPPXXRLAPPXTXXP 1394
            A P  P      P+P     +P P P     L P P                AP      
Sbjct: 101  AAPTAPAEPVPAPAPEPE-AAPAPAPVAEPALAPSPDAAPAADGASYSAGAAAPAGGASY 159

Query: 1395 PAXXRXXXXXMXXXAXXAAXGRRPGPXXAPXPPP 1496
            PA  R             A    P P  AP P P
Sbjct: 160  PAKKRRVARDYAEGGAAPAAPAEPAPEPAPAPAP 193


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical protein
            F58E10.3a protein.
          Length = 561

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = -3

Query: 1378 GGASRXXGGXXXXXRSX*XGXGRXRXXXGGGXGEXGXXGGXGXTXXXXG 1232
            GG     GG     R    G G      GGG G  G  GG G +    G
Sbjct: 26   GGGRGGGGGGYSGGRGGGYGGGGGGGYGGGGYGGGGRGGGRGGSNGSAG 74


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical protein
            C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 25/95 (26%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
 Frame = +3

Query: 1224 PXXPXLXXVXPSPPXXPXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXT-XXPPA 1400
            P  P +    P PP     P PPP      P P   +      PP  R  PP     PP 
Sbjct: 278  PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP-GMPGMPPPPPPSRFGPPGMGGMPPP 336

Query: 1401 XXRXXXXXMXXXAXXAAXGRRPGPXXAPXPPPXXP 1505
                                  GP   P PPP  P
Sbjct: 337  PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 371


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical protein
            C01B10.6b protein.
          Length = 503

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +2

Query: 1253 PXPXXXPPLXPPPSXXXPXSAXPXLXAPAXXPXAXXXXTXPAXD 1384
            P P    P   PP    P S  P   AP   P        P  D
Sbjct: 401  PKPSPTDPTPVPPVAPTPPSVCPTTVAPTTTPALLTSTIAPTAD 444


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical protein
            C01B10.6a protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +2

Query: 1253 PXPXXXPPLXPPPSXXXPXSAXPXLXAPAXXPXAXXXXTXPAXD 1384
            P P    P   PP    P S  P   AP   P        P  D
Sbjct: 404  PKPSPTDPTPVPPVAPTPPSVCPTTVAPTTTPALLTSTIAPTAD 447


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA binding
            protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 25/95 (26%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
 Frame = +3

Query: 1224 PXXPXLXXVXPSPPXXPXSPXPPPXXXRLRPXPXYXLRXXXXXPPXXRLAPPXT-XXPPA 1400
            P  P +    P PP     P PPP      P P   +      PP  R  PP     PP 
Sbjct: 288  PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP-GMPGMPPPPPPSRFGPPGMGGMPPP 346

Query: 1401 XXRXXXXXMXXXAXXAAXGRRPGPXXAPXPPPXXP 1505
                                  GP   P PPP  P
Sbjct: 347  PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,625,747
Number of Sequences: 27780
Number of extensions: 418433
Number of successful extensions: 1715
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4462926140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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