Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B06_e426_04.seq
         (1530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...   114   3e-26
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   3.0  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   9.1  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score =  114 bits (274), Expect = 3e-26
 Identities = 66/149 (44%), Positives = 86/149 (57%), Gaps = 8/149 (5%)
 Frame = +3

Query: 231 MNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDXXXXXXXXXXXVNTIPGIEEVN 404
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DD           +  + GI+EVN
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVN 60

Query: 405 MIKDDGTVIHFNNPKAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRLAS 584
           M K+DG VI+F  P   +SL   T AI G  E K ++E+LPGIL+ LGPE L  L+++A 
Sbjct: 61  MFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAE 120

Query: 585 SV---AAPKPLD---EDDEVPNLVGNFDE 653
            +      K  D   +D E+P+LV  FDE
Sbjct: 121 QLKVSEGEKGADAQADDGEIPDLVEKFDE 149


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 296 AQEEGCTRYSGNRR*EIAIVSQKIVSEHHSWH*RGQYD 409
           A EE  T   GN    +   S+K  S +HS H +G YD
Sbjct: 391 AWEEDLTPQYGNLTTRLLFASKKYWSRNHSSHSQGNYD 428


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 151 ACVNN*IISLKSAARVCRE 207
           A VN  I SLKSAA+VC E
Sbjct: 637 ATVNQRITSLKSAAKVCSE 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,373,408
Number of Sequences: 5004
Number of extensions: 74745
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 858281342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)