Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_B06_e426_04.seq
(1530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 136 6e-32
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 133 4e-31
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 88 2e-17
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 33 0.79
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988... 30 4.2
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036... 29 9.7
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947... 29 9.7
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858... 29 9.7
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 136 bits (328), Expect = 6e-32
Identities = 73/156 (46%), Positives = 97/156 (62%), Gaps = 13/156 (8%)
Frame = +3
Query: 231 MNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 410
MN +KLKK+ VR GGKG+ RRKKK VH T TDD VN IPGIEEVN+
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 500
Query: 411 KDDGTVIHFNNPKAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRLA--- 581
KDD VI F NPK QAS+ ANT+ ++G + K++ ++LP I++QLGP+ L+ L+RLA
Sbjct: 501 KDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQF 559
Query: 582 --------SSVAAPKPLDEDDEVPNLV--GNFDEAS 659
+ +A D+DD+VP LV F+EA+
Sbjct: 560 QKQVPGAEAGASAGNAQDDDDDVPELVPGETFEEAA 595
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 133 bits (321), Expect = 4e-31
Identities = 64/126 (50%), Positives = 83/126 (65%)
Frame = +3
Query: 228 IMNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNM 407
+MN +KLKK+ VR GGKG+ RRKKK VH T TDD VNTIPGIEEVN+
Sbjct: 1 MMNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNI 60
Query: 408 IKDDGTVIHFNNPKAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRLASS 587
KDD VI F NPK QAS+ ANT+ ++G + K++ ++LP I++QLGP+ L+ L+RLA
Sbjct: 61 FKDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNLRRLAEQ 119
Query: 588 VAAPKP 605
P
Sbjct: 120 FQKQAP 125
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 87.8 bits (208), Expect = 2e-17
Identities = 59/141 (41%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Frame = +3
Query: 267 VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKDDGTVIHFNNP 446
VR GGKGT RRKKK VH T TDD VNTIP IEEVN+ KDD VI F NP
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNP 63
Query: 447 KAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRL---------ASSVAAP 599
K++ ++LPGI++QLGP+ + LKR+ A+ A
Sbjct: 64 -------------------KELQDVLPGIINQLGPDNMEHLKRIAEEMQKQVAAAGATAQ 104
Query: 600 KPLDEDDEVPNLV--GNFDEA 656
+ DD+VP LV NF+E+
Sbjct: 105 AKEENDDDVPELVPGENFEES 125
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 32.7 bits (71), Expect = 0.79
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 388 PGMVFTDNFLRDDCNFLSSVAAVTCTTFFLRLGVPLPPMRTCDCS 254
PG+VF + RD FL +V V +GVP PP R CS
Sbjct: 670 PGLVFDAGY-RDYLQFLCAVPGVDDAAVLRAVGVPCPPSRARWCS 713
>04_03_0588 +
17595299-17596151,17597519-17597665,17598562-17598837,
17599108-17599805
Length = 657
Score = 30.3 bits (65), Expect = 4.2
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -1
Query: 297 ASVYPYRRCAPATVVS-LAFPYSLCYFNVLKFSTDTRST 184
+S+Y + RCA A +V +F +S+ Y + KF++DT S+
Sbjct: 182 SSMYTWNRCAYAALVEESSFNFSMIYDSSSKFNSDTVSS 220
>05_03_0564 -
15502458-15503303,15503394-15503474,15503572-15503620,
15503786-15503828,15504576-15504633,15504720-15504858,
15504980-15505107
Length = 447
Score = 29.1 bits (62), Expect = 9.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 552 EGLNQLKRLASSVAAPKPLDEDDEVPNLVGNFDEA 656
EG + + A +P+ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
>05_03_0563 -
15493570-15494415,15494506-15494586,15494684-15494732,
15494898-15494940,15495688-15495745,15495832-15495970,
15496092-15496219
Length = 447
Score = 29.1 bits (62), Expect = 9.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 552 EGLNQLKRLASSVAAPKPLDEDDEVPNLVGNFDEA 656
EG + + A +P+ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
>05_03_0562 -
15484733-15485578,15485669-15485749,15485847-15485895,
15486061-15486103,15486851-15486908,15486995-15487133,
15487255-15487382
Length = 447
Score = 29.1 bits (62), Expect = 9.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 552 EGLNQLKRLASSVAAPKPLDEDDEVPNLVGNFDEA 656
EG + + A +P+ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,893,989
Number of Sequences: 37544
Number of extensions: 512209
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4919293792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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