Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B06_e426_04.seq
         (1530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)                   59   1e-08
SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.80 

>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
          Length = 98

 Score = 58.8 bits (136), Expect = 1e-08
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +3

Query: 372 VNTIPGIEEVNMIKDDGTVIHFNNPKAQASLAA 470
           VN IPGIEEVNMIK+DGTVIHFNNPKA+    A
Sbjct: 54  VNPIPGIEEVNMIKEDGTVIHFNNPKAEMGSGA 86


>SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +3

Query: 609 DEDDEVPNLVGNFDEAS 659
           DEDDEVP LV NFDE S
Sbjct: 10  DEDDEVPELVENFDEPS 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,394,263
Number of Sequences: 59808
Number of extensions: 570509
Number of successful extensions: 917
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4976817448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)