Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B06_e426_04.seq
         (1530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...   187   2e-47
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    31   1.6  
Z68220-1|CAA92484.1|  216|Caenorhabditis elegans Hypothetical pr...    30   3.8  
Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical pr...    30   5.0  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score =  187 bits (455), Expect = 2e-47
 Identities = 93/145 (64%), Positives = 108/145 (74%), Gaps = 5/145 (3%)
 Frame = +3

Query: 240 EKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 410
           E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DD           V  IPGIEEVNMI
Sbjct: 8   ERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLKKLSVTNIPGIEEVNMI 67

Query: 411 KDDGTVIHFNNPKAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRLASSV 590
           KDDGTVIHFNNPK Q S+ ANTF++TG  +NKQI EMLPGIL+QLGPE L  LK+LA++V
Sbjct: 68  KDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLKKLANNV 127

Query: 591 A--APKPLDEDDEVPNLVGNFDEAS 659
               P    ED++VP LVG+FD AS
Sbjct: 128 TKLGPDGKGEDEDVPELVGDFDAAS 152


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 510 IAEMLPGILSQLGPEGLNQLKRLASSVAAPKPLDEDDEVPNLVGNFD 650
           + E+     S+ G  G ++L   A+  A P  +D   ++PNL  NFD
Sbjct: 194 VKELKAACESEAGSTGKDRLLVTAAVAAGPATIDAGYDIPNLAPNFD 240


>Z68220-1|CAA92484.1|  216|Caenorhabditis elegans Hypothetical
           protein T20D3.1 protein.
          Length = 216

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 515 SNLLVFTVACDGKGVRSERSLSFWIIEVYN 426
           SN+ V    C+    R ERS+  W ++VYN
Sbjct: 47  SNVTVKPTTCEASWTRVERSIGGWCLKVYN 76


>Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical
           protein R10E8.4 protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 447 KAQASLAANTFAITGHGENKQIAEMLPGILSQLGPEGLNQLKRLASSVAAPKPLDEDDEV 626
           K +  L  N F +T   +N  +A     ILS L P+ L+ +K   S + + + LD+  + 
Sbjct: 125 KREILLKVNEFVLTVPSKNGHVAS----ILSLLDPDALSAVKLNTSEMMSEQLLDQLSKF 180

Query: 627 PN 632
           PN
Sbjct: 181 PN 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,009,737
Number of Sequences: 27780
Number of extensions: 449626
Number of successful extensions: 903
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4400652752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)