Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_B05_e418_03.seq
(1544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.24
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 2.3
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 28 3.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 4.0
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 27 5.2
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.2
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 27 5.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.2
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 6.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 6.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 6.9
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 9.2
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.24
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 1449 SSXXPXXPPRPXPPPPXXXXSPXPPXXRAPPP 1544
S+ P PP PPPP P P PPP
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 1470 PPRPXPPPPXXXXSPXPPXXRAPP 1541
PPRP PPP +P P +APP
Sbjct: 144 PPRPSIPPPSPASAP-PIPSKAPP 166
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -2
Query: 505 LQIPSFFIQNIRFFFLICISSSV 437
L+IPSFFI++++F +LI S +
Sbjct: 38 LEIPSFFIESLQFHYLINQSEKI 60
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 1540 GGARXXGGXGEXXXXGGGGXGRGGXXG 1460
GGAR G G GG G RGG G
Sbjct: 33 GGARGGGRGGARGGRGGRGGARGGRGG 59
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 584 GLCRFLAYTSHVQNESESTRKCQLNVWKAFIFAF 685
G+ R L Y + + EST K + W+ F+ F
Sbjct: 20 GVLRLLQYNEQLMSGWESTMKDDIGYWRRFVHDF 53
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = -2
Query: 1537 GARX--XGGXGEXXXXGGGGXGRGGXXGXXEEXXXXXAAXXRGGGQXGG 1397
GAR G G GG G RGG G + GGG GG
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -2
Query: 517 IINSLQIPSFFIQNIRFFFLICISSSVFTIF 425
I+N+ + S + +FFF+I +S+V++IF
Sbjct: 107 ILNARNVISCSLNTQKFFFIIVAASNVYSIF 137
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 1470 PPRPXPPPPXXXXSPXPPXXRAPPP 1544
PP P PPP P PP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP---PPPP 782
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -2
Query: 526 FRLIINSLQIPSFFIQNIRFFFLICISSSVFTIFLH-----HTHTAFLF 395
F L + +P FF+Q F+ ++C S F + LH ++HT F
Sbjct: 16 FSLCTLVISVPFFFLQMTPFYSILCF-LSFFALLLHLPCSIYSHTLHFF 63
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 1449 SSXXPXXPPRPXPPPPXXXXSPXPPXXRAPPP 1544
+S P PP P PPP S PP PPP
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPP---PPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +3
Query: 1452 SXXPXXPPRPXPPPPXXXXS-PXPPXXRAPPP 1544
S PP P PP S P PP R+ PP
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Frame = -2
Query: 1513 GEXXXXGGG-GXGRGGXXGXXEEXXXXXA--AXXRGGGQXGGXA 1391
G GGG G G GG G ++ RGGG GG A
Sbjct: 130 GHAFAGGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFA 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,481,648
Number of Sequences: 5004
Number of extensions: 83194
Number of successful extensions: 286
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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