Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B04_e410_04.seq
         (1596 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ...    31   8.9  

>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
            alpha-1 type II collagen. ).
          Length = 1418

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 26/88 (29%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
 Frame = -2

Query: 1058 GXSGXXXAEXWAXXPGXXGXX--PXXQAKAXPPXPRFSXWKPGIXXXXXLXGPXXXXXXK 885
            G  G   A   A  PG  G    P  Q    P  P+    KPGI       GP       
Sbjct: 348  GAKGSAGAPGIAGAPGFPGPRGPPDPQGATGPLGPKGQTGKPGIAGFKGEQGPKGEPGPA 407

Query: 884  XXRXRP-PHXXEKXYGKQWTRXGXGPIG 804
              +  P P   E   G +    G GPIG
Sbjct: 408  GPQGAPGPAGEEGKRGARGEPGGVGPIG 435


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,154,885
Number of Sequences: 237096
Number of extensions: 1940831
Number of successful extensions: 2354
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2343
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23847980606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)