Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B04_e410_04.seq
         (1596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81470-7|CAB03885.1|  129|Caenorhabditis elegans Hypothetical pr...    31   2.3  
Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical pr...    30   5.2  
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    30   5.2  
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    30   5.2  

>Z81470-7|CAB03885.1|  129|Caenorhabditis elegans Hypothetical
           protein C14A6.8 protein.
          Length = 129

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = -1

Query: 639 AKLPXVKGFVSNDIVTVFPKTXFCVCMIFICYTILVYIATQYGIRI 502
           AK+  +K  + N  V +F  T   + +I +C+ +L+Y+ T YGIRI
Sbjct: 84  AKIKKLKNKIKN--VKIFFWTMIGIWVICLCFFVLIYLNT-YGIRI 126


>Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical
           protein F56F3.2b protein.
          Length = 685

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 288 LLPIGIYYNNSIIVYKIITLRDTSICLYIIIAMFRYYFVHIPIVYFKFYQLP 133
           LL +  +Y   ++   I+TLR  S   YI++ +FR++  +I  V F +   P
Sbjct: 324 LLALSAFYTTYLLFGNILTLR--SAFDYILMRLFRFWPAYIVCVLFMYVIFP 373


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 288 LLPIGIYYNNSIIVYKIITLRDTSICLYIIIAMFRYYFVHIPIVYFKFYQLP 133
           LL +  +Y   ++   I+TLR  S   YI++ +FR++  +I  V F +   P
Sbjct: 324 LLALSAFYTTYLLFGNILTLR--SAFDYILMRLFRFWPAYIVCVLFMYVIFP 373


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 288 LLPIGIYYNNSIIVYKIITLRDTSICLYIIIAMFRYYFVHIPIVYFKFYQLP 133
           LL +  +Y   ++   I+TLR  S   YI++ +FR++  +I  V F +   P
Sbjct: 324 LLALSAFYTTYLLFGNILTLR--SAFDYILMRLFRFWPAYIVCVLFMYVIFP 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,829,102
Number of Sequences: 27780
Number of extensions: 295142
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4628988508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)