Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B04_e410_04.seq
         (1596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922...    31   2.8  
At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138...    30   3.7  

>At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922:
           DIE2/ALG10 family
          Length = 509

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 291 ILLPIGIYYNNSIIVYKIITLRDTSICLYIIIAMFRYYFVHIPIVYFKFYQLPTY 127
           IL+P+ +Y   SI+     T R T I +Y +        V  P++ F++Y +P Y
Sbjct: 405 ILVPVYVYSWFSILTLLAKTRRQTWILVYFLATCG--VLVPTPLIEFRYYTIPFY 457


>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 567

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 83  FPVPNCLQTRGXTTSX*ERPPP 18
           FP P+C+  R  TT+   RPPP
Sbjct: 544 FPCPDCMSRRNKTTTPESRPPP 565


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,405,951
Number of Sequences: 28952
Number of extensions: 252094
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4308450624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)