Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B03_e402_03.seq
         (1331 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_35732| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.8  
SB_33166| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.8  

>SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 33.5 bits (73), Expect = 0.39
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -3

Query: 60 PAARGIH*XLERPPPR 13
          PAARGIH  LERPPPR
Sbjct: 14 PAARGIHYVLERPPPR 29


>SB_35732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -2

Query: 91  PSEASPSCRIXCSPGDPLV 35
           P EAS S    CSPGDPLV
Sbjct: 46  PHEASRSASNSCSPGDPLV 64


>SB_33166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 114 RNSKRCENQAKLLPRAEXPAARGIH*XLERPPPR 13
           +N +RC     +LPR     + G    LERPPPR
Sbjct: 44  KNYQRCTPVVGMLPRRSNSCSPGDPLVLERPPPR 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,062,069
Number of Sequences: 59808
Number of extensions: 129197
Number of successful extensions: 1168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4235333015
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)