Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B02_e394_04.seq
         (1558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   206   8e-54
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   203   4e-53
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   198   1e-51
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   2.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   5.3  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   7.0  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  206 bits (502), Expect = 8e-54
 Identities = 100/214 (46%), Positives = 138/214 (64%), Gaps = 2/214 (0%)
 Frame = +1

Query: 172 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 351
           SK+    PES+                   ++++A  KKR+ I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 352 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNK 531
           +I L R+AR  GNYYVP E KL FVIRIRG+N + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129

Query: 532 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICV 711
           AT  ML++ EPY+ +G PNLK+VREL+YKRGF K+N +R+ ++ N++IE  L K +I+ +
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSI 189

Query: 712 XDLIHEIFXV--XVRSSSTQVLPVAIQTDNPDWR 807
            DLIHEI+ V    + ++  + P  + +    WR
Sbjct: 190 EDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWR 223



 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 18/43 (41%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +2

Query: 770 FLWPFKLTTPTGGWRXKTI-HYVDGGDFGXREDNVXXLLXRMV 895
           F+WPF+L++P GGWR +   H+++GGD G R++++  L+ +M+
Sbjct: 209 FIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKML 251


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  203 bits (496), Expect = 4e-53
 Identities = 97/207 (46%), Positives = 135/207 (65%), Gaps = 2/207 (0%)
 Frame = +1

Query: 193 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 372
           PES+                   +++SA  KKR+ I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 373 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 552
           AR  GNY+VP E KL FV+RIRG+N + PK RK++QL RL QINNG+FV+ NKA   ML+
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135

Query: 553 IAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVXDLIHEI 732
           + EPY+ +G PN K+VREL+YKRGF K+N +R+P++ N++IE  L K +I+ V DLIHEI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEI 195

Query: 733 FXV--XVRSSSTQVLPVAIQTDNPDWR 807
           + V    + ++  + P  + +    WR
Sbjct: 196 YTVGPNFKQAANFLWPFKLSSPLGGWR 222



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 20/43 (46%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +2

Query: 770 FLWPFKLTTPTGGWRXKTI-HYVDGGDFGXREDNVXXLLXRMV 895
           FLWPFKL++P GGWR +   H+++GGD G R++++  L+ +M+
Sbjct: 208 FLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKML 250


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  198 bits (484), Expect = 1e-51
 Identities = 90/161 (55%), Positives = 120/161 (74%)
 Frame = +1

Query: 259 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 438
           + ++ A  K RKE FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI 
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 439 GVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYK 618
           GV  + PK+RKVL+L RL +INN VFVR NKA   MLRI EPY+ +G PNL SVREL+YK
Sbjct: 97  GVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYK 156

Query: 619 RGFAKLNGKRVPITSNSLIEKRLSKQNIICVXDLIHEIFXV 741
           RGF K+NG+R+ ++ N+LIE+ L K ++I + D+IHEI+ V
Sbjct: 157 RGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNV 197


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 277 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 390
           S+K+ +EI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 373  ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRL 492
            + N+G YY  G   +AFV  I GV + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 583 PNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 705
           P LK+ REL+ K+   +     V   SN ++EK L   +II
Sbjct: 423 PKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDII 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,870,524
Number of Sequences: 5004
Number of extensions: 64421
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 876120908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)