Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B02_e394_04.seq
         (1558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   213   2e-55
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   207   2e-53
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...   132   5e-31
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356...    31   1.9  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  213 bits (521), Expect = 2e-55
 Identities = 98/188 (52%), Positives = 134/188 (71%)
 Frame = +1

Query: 178 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 357
           K   VPESV               +  L  +  +++ RK IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 358 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 537
           +L R+AR +G +YV  EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67  QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126

Query: 538 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVXD 717
           +NMLR  EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC+ D
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186

Query: 718 LIHEIFXV 741
           L+HEI  V
Sbjct: 187 LVHEIMTV 194



 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 24/41 (58%), Positives = 28/41 (68%)
 Frame = +2

Query: 770 FLWPFKLTTPTGGWRXKTIHYVDGGDFGXREDNVXXLLXRM 892
           FLWPFKL  P GG + K  HYV+GGD G RED +  L+ RM
Sbjct: 204 FLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRM 244


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  207 bits (505), Expect = 2e-53
 Identities = 98/190 (51%), Positives = 133/190 (70%), Gaps = 6/190 (3%)
 Frame = +1

Query: 190 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 369
           VPESV               +  +  +  SI+ RK IF RA+QY +EY  +E++ ++L R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 370 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 549
           +AR +G +YV  E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70  EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129

Query: 550 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNIICV 711
           R  EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T+N +IE+       L K +IIC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189

Query: 712 XDLIHEIFXV 741
            DL+HEI  V
Sbjct: 190 EDLVHEIMTV 199



 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 23/41 (56%), Positives = 28/41 (68%)
 Frame = +2

Query: 770 FLWPFKLTTPTGGWRXKTIHYVDGGDFGXREDNVXXLLXRM 892
           FLWPFKL  P GG + K  HYV+GGD G RE+ +  L+ RM
Sbjct: 209 FLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRM 249


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score =  132 bits (320), Expect = 5e-31
 Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 5/220 (2%)
 Frame = +1

Query: 166 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 345
           E +++LP V E+V               +    +R       K   KR E +V+E+R KE
Sbjct: 4   EGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNKE 63

Query: 346 RDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVF 516
            D +R+  + + R     P E   +KL F IRI G   + P +R++L+  RL Q+  GVF
Sbjct: 64  LDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVF 121

Query: 517 VRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQ 696
           ++   AT+  L + EP+I +G+PNLK+V++L+YK+G   L+ +  P+TSN LIEK L + 
Sbjct: 122 LKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEY 181

Query: 697 NIICVXDLIHEIFXV--XVRSSSTQVLPVAIQTDNPDWRL 810
            IIC+ DL+HEI  V    R +S  ++P  ++   P+ RL
Sbjct: 182 GIICLEDLVHEIASVGPHFREASNFLMPFKLKC--PERRL 219


>02_05_0756 -
           31534011-31534141,31534235-31535338,31535448-31535692,
           31535789-31535940,31536051-31536158
          Length = 579

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 444 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 289
           D TN  +KC     G+   A++ ++S QS  I +LDA ++    G  ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,735,138
Number of Sequences: 37544
Number of extensions: 470376
Number of successful extensions: 1117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5023712764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)