Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_B02_e394_04.seq
(1558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 213 2e-55
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 213 2e-55
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 210 1e-54
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 210 1e-54
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 210 1e-54
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 206 2e-53
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 124 1e-28
At1g31820.1 68414.m03908 amino acid permease family protein weak... 30 4.7
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 6.3
At3g52860.1 68416.m05825 expressed protein 29 8.3
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 213 bits (521), Expect = 2e-55
Identities = 100/184 (54%), Positives = 130/184 (70%)
Frame = +1
Query: 190 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 369
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 370 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 549
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 550 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVXDLIHE 729
R EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IICV DLIHE
Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHE 192
Query: 730 IFXV 741
I V
Sbjct: 193 IMTV 196
Score = 52.8 bits (121), Expect = 6e-07
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 770 FLWPFKLTTPTGGWRXKTIHYVDGGDFGXREDNVXXLLXRM 892
FLWPF+L P GG + K HYV+GGD G RE+ + L+ RM
Sbjct: 206 FLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 246
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 213 bits (521), Expect = 2e-55
Identities = 100/184 (54%), Positives = 130/184 (70%)
Frame = +1
Query: 190 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 369
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 370 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 549
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 550 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVXDLIHE 729
R EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IICV DLIHE
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHE 187
Query: 730 IFXV 741
I V
Sbjct: 188 IMTV 191
Score = 52.8 bits (121), Expect = 6e-07
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 770 FLWPFKLTTPTGGWRXKTIHYVDGGDFGXREDNVXXLLXRM 892
FLWPF+L P GG + K HYV+GGD G RE+ + L+ RM
Sbjct: 201 FLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 241
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 210 bits (514), Expect = 1e-54
Identities = 100/191 (52%), Positives = 133/191 (69%)
Frame = +1
Query: 169 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 348
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 349 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 528
+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 529 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 708
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K IIC
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIIC 182
Query: 709 VXDLIHEIFXV 741
V DLIHEI V
Sbjct: 183 VEDLIHEIMTV 193
Score = 53.2 bits (122), Expect = 4e-07
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 770 FLWPFKLTTPTGGWRXKTIHYVDGGDFGXREDNVXXLLXRM 892
FLWPF+L P GG + K HYV+GGD G RE+ + L+ RM
Sbjct: 203 FLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 210 bits (514), Expect = 1e-54
Identities = 100/191 (52%), Positives = 133/191 (69%)
Frame = +1
Query: 169 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 348
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 349 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 528
+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 529 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 708
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K IIC
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIIC 182
Query: 709 VXDLIHEIFXV 741
V DLIHEI V
Sbjct: 183 VEDLIHEIMTV 193
Score = 53.2 bits (122), Expect = 4e-07
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 770 FLWPFKLTTPTGGWRXKTIHYVDGGDFGXREDNVXXLLXRM 892
FLWPF+L P GG + K HYV+GGD G RE+ + L+ RM
Sbjct: 203 FLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 210 bits (514), Expect = 1e-54
Identities = 100/191 (52%), Positives = 133/191 (69%)
Frame = +1
Query: 169 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 348
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 349 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 528
+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 529 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 708
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K IIC
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIIC 182
Query: 709 VXDLIHEIFXV 741
V DLIHEI V
Sbjct: 183 VEDLIHEIMTV 193
Score = 53.2 bits (122), Expect = 4e-07
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 770 FLWPFKLTTPTGGWRXKTIHYVDGGDFGXREDNVXXLLXRM 892
FLWPF+L P GG + K HYV+GGD G RE+ + L+ RM
Sbjct: 203 FLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 206 bits (504), Expect = 2e-53
Identities = 98/184 (53%), Positives = 128/184 (69%)
Frame = +1
Query: 190 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 369
VPESV Q + + + RK IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 370 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 549
+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 550 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVXDLIHE 729
R EPY+ +G+PNLKSV+EL+YKRG+ KLN +R+ +T NS++E+ L K IIC DLIHE
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHE 187
Query: 730 IFXV 741
I V
Sbjct: 188 ILTV 191
Score = 53.2 bits (122), Expect = 4e-07
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 770 FLWPFKLTTPTGGWRXKTIHYVDGGDFGXREDNVXXLLXRM 892
FLWPF+L P GG + K HYV+GGD G RE+ + L+ RM
Sbjct: 201 FLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRM 241
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 124 bits (300), Expect = 1e-28
Identities = 63/192 (32%), Positives = 105/192 (54%)
Frame = +1
Query: 166 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 345
E++K L +PE V + S KK+ KR E +V E+R KE
Sbjct: 4 EEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAKE 63
Query: 346 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 525
D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF +
Sbjct: 64 VDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKA 123
Query: 526 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 705
+ L +PY+ +GYPN KSV++L+YK+G + G VP+T N++IE+ L + I+
Sbjct: 124 TDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKIL 183
Query: 706 CVXDLIHEIFXV 741
+ DL++EI V
Sbjct: 184 GIEDLVNEIARV 195
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 770 FLWPFKLTTPTGG--WRXKTIHYVDGGDFGXREDNVXXLLXRM 892
FL P KL P R K + + +GGD G RED + L+ +M
Sbjct: 205 FLGPLKLNKPVADVLHRKKQV-FSEGGDTGNREDKINDLISKM 246
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 348 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDL 250
TL A+ + ++F +L +F PLL+G+G PL+ +L
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDREL 278
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.5 bits (63), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 458 GDTWLTPRIRMTNASLASPGT 396
G TW+ P I +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 259 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 357
LK + IKK +F+ +++ VKE K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,132,726
Number of Sequences: 28952
Number of extensions: 353677
Number of successful extensions: 811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4183148928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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