Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B01_e386_03.seq
         (1520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    29   1.7  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   6.8  

>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 383 HHPHFAELSSVSDVTGGGVPVTISGTNSRLR-DDTEQKNPISLDPTR----GSNPRPQND 219
           H PH+A+   +SD+        +     R+R  D   +  +S D  R    G N  P++D
Sbjct: 162 HEPHYADKLQMSDILNDDSNPKLVVHLDRIRSQDNNPEAKVSHDSDRVKYYGKNVLPEHD 221

Query: 218 SRTVIQL 198
           S+ +I+L
Sbjct: 222 SKGLIRL 228


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -1

Query: 938 YYLAXHV-YVNXYVPSMLML*WLGAFXIMXYINNXRSLFAVVELIRSFVIL*WRVIYYSK 762
           YY+   V YV+ Y PS  +  +  AF +  +      +  VV  I  + I+    IY+  
Sbjct: 655 YYIMGRVLYVHHYEPSYALSTFTAAFVVDWFTKKMPKIVRVVVFISLYAIIAGVFIYFKD 714

Query: 761 TYF 753
             F
Sbjct: 715 VTF 717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,156,784
Number of Sequences: 5004
Number of extensions: 81569
Number of successful extensions: 159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 852334820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)