Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B01_e386_03.seq
         (1520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031...    29   7.3  
02_05_0660 + 30687366-30687370,30687823-30688765,30688820-306889...    29   7.3  

>08_02_1480 +
           27401923-27402158,27402847-27402982,27403119-27403168,
           27403810-27403813,27404394-27404494,27405084-27406305
          Length = 582

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -3

Query: 234 ETSERQSNRNTIAPPRRIIYDKYRKKNIHSSLLLLDFKYMSIIGKIIKCEFASCRIXCSP 55
           + +  ++ RN I   +R  Y+K R+K  H  L       +++I +   CE+ SC     P
Sbjct: 160 DLNSTEAERNVIQTNKRNDYEKLRRK-CHHVLHSYKGSGLNVINEAAACEYHSCNEESEP 218


>02_05_0660 +
           30687366-30687370,30687823-30688765,30688820-30688971,
           30689301-30689316,30690410-30690508,30690598-30690671,
           30690827-30691076
          Length = 512

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 715 YRITNIR*GSWPKRPNSAILRYFTGVT 635
           Y +T  R GSWP +PN A+ R +   T
Sbjct: 369 YVLTRKRWGSWPSQPNKAVPRRYQEAT 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,080,391
Number of Sequences: 37544
Number of extensions: 524258
Number of successful extensions: 1080
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4884487468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)