Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_B01_e386_03.seq
         (1520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.2  
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                29   9.8  

>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 35/120 (29%), Positives = 53/120 (44%)
 Frame = +1

Query: 142  ATMNIFFSVFVINYTPRWRNCITVRLSF*GLGFDPRVGSSDIGFFCSVSSRSLEFVPDIV 321
            A M++ F V   N    WR  ++   S  G  FD     + IGF     S ++ F  +IV
Sbjct: 3434 AYMDVGFIVDSSNNVD-WRQMLSYVKSILG-SFDISHRGTHIGFITYSDSATIAFPFNIV 3491

Query: 322  TGTPPPVTSETELSSAKCGWCSSLFHLCLTLRG*QS*AYVMLYIIGFGNREVINRS*LIL 501
            +GT   VT+ ++L         +   + L L+     AY  LY  G+G R+   R  +IL
Sbjct: 3492 SGTRYTVTAISQLVDGVRHMRGTDRRIDLALQ----LAYSQLYTSGYGARDGARRVLVIL 3547


>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 650 VSKYCRIWALRPRASSNIRYSVFDQITIRDISSV 751
           VSK C I   +PR S+  RY     I I D++SV
Sbjct: 147 VSKGCHIRIKQPRNSTYDRYKYISGIVIEDVTSV 180


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -1

Query: 341 TGGGVPVTISGTNSRLRDDTEQKNPISLDPTRGSNPRPQNDSR 213
           T GG P    GT    + DT    P      RGS P    D+R
Sbjct: 398 TNGGPPYNARGTRPPDKRDTRVSQPPDTRDPRGSRPTDTRDAR 440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,342,183
Number of Sequences: 59808
Number of extensions: 620414
Number of successful extensions: 1352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4941604117
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)